Glyma06g15860 - SoyBase

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Report for Sequence Feature Glyma06g15860

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12468238
stop:	12473428
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G13680	AT	Annotation by Michelle Graham. TAIR10: callose synthase 5 \| chr2:5695124-5706134 FORWARD LENGTH=1923	SoyBase	E_val: 0	ISS
GO:0006075	GO-bp	Annotation by Michelle Graham. GO Biological Process: (1->3)-beta-D-glucan biosynthetic process	SoyBase	N/A	ISS
GO:0009556	GO-bp	Annotation by Michelle Graham. GO Biological Process: microsporogenesis	SoyBase	N/A	ISS
GO:0009827	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall modification	SoyBase	N/A	ISS
GO:0009846	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen germination	SoyBase	N/A	ISS
GO:0009860	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube growth	SoyBase	N/A	ISS
GO:0010208	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen wall assembly	SoyBase	N/A	ISS
GO:0010584	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen exine formation	SoyBase	N/A	ISS
GO:0080092	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of pollen tube growth	SoyBase	N/A	ISS
GO:0000148	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: 1,3-beta-D-glucan synthase complex	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 1,3-beta-D-glucan synthase activity	SoyBase	N/A	ISS
PTHR12741	Panther	UNCHARACTERIZED DUF605	JGI		ISS
PTHR12741:SF4	Panther	gb def: Hypothetical protein F10M23.90 (AT4g26750/F10M23 90) (Hypothetical protein AT4g2	JGI		ISS
PF02364	PFAM	1,3-beta-glucan synthase component	JGI		ISS
UniRef100_G7JBJ9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Callose synthase n=1 Tax=Medicago truncatula RepID=G7JBJ9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBJ0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KBJ0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g15860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15860

Paralog	Evidence	Comments
Glyma04g39120	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g153100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g15860

Limit To All Plant Sequences

>Glyma06g15860.1   sequence type=CDS   gene model=Glyma06g15860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTGTCCTAACTCCATACTACAGTGAAGAGACTGTCTATTCGAAGAATGACCTTGAGGTTGAAAATGAAGATGGTGTGTCAATCATATATTACCTGCAAAAGATCTACCCTGATGAGTGGATAAACTTCATGGAACGGCTTGATTGTAAGAAAGATAGTGAGATATGGGAGAAAGATGAAAACATATTGCAGCTACGTCACTGGGCCTTGTTACGAGGGCAAACTCTTAGCCTGACAGTTAGGGGAATGATGTACTACCGGCGGGCTATTAAGCTTAAGGCTTTTCTTGATATGGAAAATGAACAGGAGATAGTTGATGGCTATAAAGCTGTTACTGCCCCATCTGAGGAAGATAAAAAGAGCCAGAAATCCTTATATGCCAGTTTAGAGGCCGTTGCTGACATGAAGTTTACATACGTCGCTACCTGTCAGAACTATGGGAATCAGAAGTGTAGTGGAGACCGCCATGCAACAGAGATCCTGAATTTGATGGTTAACAATCCTTCACTTCGTGTGGCTTATATTGATGAAGTTGAAGAAAGAGAAGGAGGAAAAGTACAGAAAGTTTATTACTCTGTACTGATCAAAGCTGTGGGCAATCTTGATCAAGAAATATTTCGAATAAAACTGCCTGGTCCAGCAAAGATAGGAGAAGGGAAGCCTGAAAATCAAAATCATGCCATCATTTTTACTAGAGGCGAAGCTCTTCAGACTATTGACATGAACCAGGATAATTACTTGGAAGAAGCTTTTAAAATGCGCAATCTTTTGGAAGAGTTTAATGAAGATCATGGGGTGCGACGACCTACAATATTAGGGGTTCGTGAGCACATCTTTACTAGCAGTGTCTCTTCCCTGGCTTGGTTTATGTCAAATCAAGAAACAAGCTTTGTCACAATTGGTCAAAGAGTTCTTGCAAGACCACTGAAGGTGCGATTCCACTATGGTCATCCAGATGATATTTTTGCTGGATTCAATTCAACACTAAGACGGGGAAATATTACTCATCATGAATATATCCAATGCGGAAAGGGTAGAGATGTTGGGCTCAATCAAATCTCACTTTTTGAAGCAAAAGTGTCTTGTGGTAACGGAGAGCAGACATTAAGCAGAGATATCTACAGGCTGGGACATCGTCTTGACTTTTTCCGCATGCTATCATGTTATTTCACGACCATTGGATTTTATATAAGCTCAGTGATTGTGGTCCTCACATGTTATGCATTCCTATATGGCAAACTGTACATGTCTTTGAGTGGATTTGAGGCTGCAATATTAAAGTTGGCTAGGAGAAAGGGAGATGATGCACTAAAGGCAGCATTAGCATCTCAATCCCTAGTTCAACTAGGACTTATAATGACTTTGCCCATGTTTATGGAAATTGGACTGGAGAGAGGGTTCAGAACTGCTATAGGTGAGCTCATAATAATGCAGTTGCAGCTAGCACCAGTTTCCTTCACTTTCTCTTTAGGGACAAAGCTGCACTATTTTGGGCGCACTGTTCTGCATGGAGGGGCAAAGTACAGAGCAACTGGGCGTGGTTTTGTTGTTCGCCATGAGAAGTTTGCTGAAAATTACAGGATGTACTCTAGGAGTCACTTTGTGAAAGGAATTGAGCTCACAATTTTGCTCATATGTTATAAGATTTATGGATCAGCAACACCCGATTCAGCGTCCTATGCTCTTCTCTCATGGTCAATGTGGTTTATGGTCTGTTCATTTCTGTTTTCTCCTTTCCTTTTCAACCCATCAGGGTTTGAATGGAAGAAGATAGTTGAGGACTGGGATGATTGGCAAAAGTGGATAAGTAATCGAGGTGGTATTGGTGTTCCTTCAAACAAGAGTTGGGAGTCATGGTGGAATGAGGAACAGGAGCATCTACAGCACACTGGGTTTCTGGGACGGATATGCGAGATTATACTTGACATGCGTTTCTTTGTCTATCAGTATGGTATTGTGTATCATCTAAATGTAGCCAGAGGTGACAAGAGCATATTGGTTTATGCTCTGTCCTGGATAGTGATAGTAGCTGTCATGGTTATCCTTAAGATTGTATCCATGGGTAGAAAGCAATTCAGCGCAGATTTCCAGTTGATGTTTCGTCTTCTCAAATTGTTTCTGTTCATTGGAGCCATTGTCGCTCTAAGCTTAATGTTTACTCTGCTGAGTCTCACAGTTGGAGACATTTTTGCTAGCCTCCTAGCCTTTTTGCCAACAGCATGGGCAGTTATTCAGATAGGACAAGCATGCAGGCCATTCTTGAAGGGCTTTGGCATGTGGGGTTCTGTCAAAGCTTTAGCAAGGGGCTACGAATACTTGAAGGGAGTGGTTATTTTTGCACCAGTGGCCATATTGGCTTGGTTCCCATTTGTTTCAGAATTCCAAACTAGGCTGCTGTTCAACCAAGCATTCAGCCGAGTACTTCAAATCCAGCGCATTCTGATTGGCGGCAAGAAGAATAAGTAG

Predicted protein sequences of Glyma06g15860

Limit To All Plant Sequences

>Glyma06g15860.1   sequence type=predicted peptide   gene model=Glyma06g15860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
SVLTPYYSEETVYSKNDLEVENEDGVSIIYYLQKIYPDEWINFMERLDCKKDSEIWEKDENILQLRHWALLRGQTLSLTVRGMMYYRRAIKLKAFLDMENEQEIVDGYKAVTAPSEEDKKSQKSLYASLEAVADMKFTYVATCQNYGNQKCSGDRHATEILNLMVNNPSLRVAYIDEVEEREGGKVQKVYYSVLIKAVGNLDQEIFRIKLPGPAKIGEGKPENQNHAIIFTRGEALQTIDMNQDNYLEEAFKMRNLLEEFNEDHGVRRPTILGVREHIFTSSVSSLAWFMSNQETSFVTIGQRVLARPLKVRFHYGHPDDIFAGFNSTLRRGNITHHEYIQCGKGRDVGLNQISLFEAKVSCGNGEQTLSRDIYRLGHRLDFFRMLSCYFTTIGFYISSVIVVLTCYAFLYGKLYMSLSGFEAAILKLARRKGDDALKAALASQSLVQLGLIMTLPMFMEIGLERGFRTAIGELIIMQLQLAPVSFTFSLGTKLHYFGRTVLHGGAKYRATGRGFVVRHEKFAENYRMYSRSHFVKGIELTILLICYKIYGSATPDSASYALLSWSMWFMVCSFLFSPFLFNPSGFEWKKIVEDWDDWQKWISNRGGIGVPSNKSWESWWNEEQEHLQHTGFLGRICEIILDMRFFVYQYGIVYHLNVARGDKSILVYALSWIVIVAVMVILKIVSMGRKQFSADFQLMFRLLKLFLFIGAIVALSLMFTLLSLTVGDIFASLLAFLPTAWAVIQIGQACRPFLKGFGMWGSVKALARGYEYLKGVVIFAPVAILAWFPFVSEFQTRLLFNQAFSRVLQIQRILIGGKKNK*

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