SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G09790 | AT | Annotation by Michelle Graham. TAIR10: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 | chr5:3039204-3040970 REVERSE LENGTH=379 | SoyBase | E_val: 1.00E-159 | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0009294 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA mediated transformation | SoyBase | N/A | ISS |
| GO:0009555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen development | SoyBase | N/A | ISS |
| GO:0051726 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle | SoyBase | N/A | ISS |
| GO:0070734 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K27 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| GO:0046976 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: histone methyltransferase activity (H3-K27 specific) | SoyBase | N/A | ISS |
| PTHR10615 | Panther | MYST-RELATED PROTEINS | JGI | ISS | |
| PTHR10615:SF20 | Panther | MYST-RELATED | JGI | ISS | |
| PF00628 | PFAM | PHD-finger | JGI | ISS | |
| PF00856 | PFAM | SET domain | JGI | ISS | |
| UniRef100_B9RU15 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Histone-lysine N-methyltransferase ATXR6, putative n=1 Tax=Ricinus communis RepID=B9RU15_RICCO | SoyBase | E_val: 9.00E-177 | ISS |
| UniRef100_I1KBH7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBH7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g15660 not represented in the dataset |
Glyma06g15660 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g39260 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g151500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g15660.1 sequence type=CDS gene model=Glyma06g15660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGACTCCAGCCACCACCAATTCCTCGCCCTCGGCTCAGCGCCACGTCGGCTTCAGTCGGCGCACGCAGGCGCCGCGCCAGCTGGACGGCGACTCGCCGCCAGTGAAGAAGTACCGGATGCTGTCAGAGATAATGGCGCGCGCGCCGTACGCGGTGGTGGAGAGAGAAACTTACAGCGACCTCTTGTGCGACCAATGCGGCTCCGGCGAGCTGCCGGAGGAGCTGCTTCTCTGCGACAAATGCGATAAAGGCTTTCACATGAAATGCGTGAGGCCTATCGTCGTGAGGATTCCGATTGGATCGTGGCTTTGCCCTAACTGTCAAGGAGGGAAGAGAGTGCGGCCTTTCTCTCAGAAGAAGATAATCGATTTCTTCGGGATTCGGAGGAGTTCTGATGATGCTAATGATAAGCGTTCCTCTCAGGATGCTAAAAAGCGTAAGAAATGTTCACGACCTCTGGTATTACATAAGAAAAAGAGGAGATTGTTACCATTTGTTCCTACAAAAGATCTTAACCGGAGATTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCCTTAAATATGGAATTCAGTGATCACCTCACATACTTGCCTGGAATGGCTCCTAGATGTGCAAATCAAGCCTTACTTGAAAATGGCGGCATGCAGACTCTTTCCAAGGAAGACATGGAGACCTTAGAACAATGCATTGCTTTGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGATTCACGTGAAGGCTATACTGTTGAGGCTGATGACCTAATCAAGGATATGACGATTATTGCTGAATACACTGGTGATGTGGATTACCTTGACACACGGGAACGTGATGACTGTGACAGTATGATGACCCTTCTTCTTGGAGCAGAAAGTTCTCAAAGTCTTGTTATTTGTGCTGATAAACGAGGAAACATTGCTCGCTTTATCAGTGGCATAAATAATCACACACAGGAAGGTAGGAAGAAGCAGAATTGTAAGTGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCCATTCGTGATATTTCCAAGGGAGAGAGGCTATATTATGATTATAATGGTCATGAGTATCAATACCCGACTCATCATTTTGTCTGA
>Glyma06g15660.1 sequence type=predicted peptide gene model=Glyma06g15660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MTPATTNSSPSAQRHVGFSRRTQAPRQLDGDSPPVKKYRMLSEIMARAPYAVVERETYSDLLCDQCGSGELPEELLLCDKCDKGFHMKCVRPIVVRIPIGSWLCPNCQGGKRVRPFSQKKIIDFFGIRRSSDDANDKRSSQDAKKRKKCSRPLVLHKKKRRLLPFVPTKDLNRRLKQMGSLASALTALNMEFSDHLTYLPGMAPRCANQALLENGGMQTLSKEDMETLEQCIALSKRGEFPPFMVVYDSREGYTVEADDLIKDMTIIAEYTGDVDYLDTRERDDCDSMMTLLLGAESSQSLVICADKRGNIARFISGINNHTQEGRKKQNCKCVRYNVNGECRVFLVAIRDISKGERLYYDYNGHEYQYPTHHFV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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