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Report for Sequence Feature Glyma06g15570

Feature Type:gene_model
Chromosome:Gm06
Start:12263396
stop:12265727
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49180AT Annotation by Michelle Graham. TAIR10: protein kinase family protein | chr1:18184814-18187444 REVERSE LENGTH=376 SoyBaseE_val: 1.00E-89ISS
GO:0006468GO-bp Annotation by Michelle Graham. GO Biological Process: protein phosphorylation SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0004672GO-mf Annotation by Michelle Graham. GO Molecular Function: protein kinase activity SoyBaseN/AISS
GO:0004674GO-mf Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity SoyBaseN/AISS
GO:0004713GO-mf Annotation by Michelle Graham. GO Molecular Function: protein tyrosine kinase activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0016301GO-mf Annotation by Michelle Graham. GO Molecular Function: kinase activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG0033 KOG Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily JGI ISS
PTHR24343Panther SERINE/THREONINE KINASE JGI ISS
PTHR24343:SF132Panther JGI ISS
PF00069PFAM Protein kinase domain JGI ISS
UniRef100_G7JAY4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine protein kinase GE16371 n=1 Tax=Medicago truncatula RepID=G7JAY4_MEDTR SoyBaseE_val: 4.00E-130ISS
UniRef100_UPI00023381AFUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023381AF related cluster n=1 Tax=unknown RepID=UPI00023381AF SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma04g39350 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g150700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g15570.2   sequence type=CDS   gene model=Glyma06g15570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATGTGAAGGCAAATTGGCGAGGAGGGTGGTGGGAGTGAGAAATCATTGTTACCTTTTGAAATCCAAAATCGGAGAGGGTTCATTCTCCGCCGTGTGGAGAGCGGAGCAGAGACCACCAACCGGCGATGACGTGGCGGTGAAGCAGGTCTTCCTCTCCAAACTCAACCCTCGCCTCAAGGCATGTTTGGATTGCGAGATCAATTTCTTGTCCTCTGTTAACCACCCCAATATTATTCGCCTTCTTCACTTCTTCCAGTATGATGGATGTGTATACCTGGTCCTTGAGTTTTGTGCTGGAGGAAATCTAGCTTCTTATATTCAAAATCATGGGAGAGTTCACCAACAAATAGCCAGAAAATTCATGCAGCAGCTTGTTGCTAGCATGTATTTTTCTGTTGAGCAGGCCCTTTATTTTTGTTATTCTGCCAGTACTCCAGTAGCAACAAAGCAAAATGCAAACTTAGTAGTAGTTCAGAACTTAAGACTACCTTGCCTCTTAAATCTTAGAAAAATGCTAAACGCTAGGAATAACATTTTGCTATCAAGTCACGGGGTTGATGCAGTACTAAAGCTCGCTGATTTTGGTCTCTCAAGGACTATATGTCCCGGTGAATATGCCGGGACAGTCTGTGGTTCTCCATTATACATGGCTCCAGAAGCTCTTAAGTTCCAGAGATATGATGACAAGGCAGATATGTGGAGTGTTGGAACCATTCTTTTTGAGCTTCTAAACGGCTACCCACCTTTTAATGGTAGAAATAATGTTCAGGTGTTGAGAAACATCAGATCTTGCACCTGTCTTCCATTTTCTCAACTGATTCTTTCAGGATTGGATCCCGACTGTCTTGACATTTGTTCTAGGCTACTATGCTTAAATCCAGCTGTGGAGCGCCTCTCCTTTGATTTTATTGACATAGCTTTCTAA

>Glyma06g15570.2   sequence type=predicted peptide   gene model=Glyma06g15570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MECEGKLARRVVGVRNHCYLLKSKIGEGSFSAVWRAEQRPPTGDDVAVKQVFLSKLNPRLKACLDCEINFLSSVNHPNIIRLLHFFQYDGCVYLVLEFCAGGNLASYIQNHGRVHQQIARKFMQQLVASMYFSVEQALYFCYSASTPVATKQNANLVVVQNLRLPCLLNLRKMLNARNNILLSSHGVDAVLKLADFGLSRTICPGEYAGTVCGSPLYMAPEALKFQRYDDKADMWSVGTILFELLNGYPPFNGRNNVQVLRNIRSCTCLPFSQLILSGLDPDCLDICSRLLCLNPAVERLSFDFIDIAF*







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