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Report for Sequence Feature Glyma06g15520

Feature Type:gene_model
Chromosome:Gm06
Start:12229942
stop:12233057
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g15520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G09810AT Annotation by Michelle Graham. TAIR10: actin 7 | chr5:3052809-3054220 FORWARD LENGTH=377 SoyBaseE_val: 0ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0007010GO-bp Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization SoyBaseN/AISS
GO:0009416GO-bp Annotation by Michelle Graham. GO Biological Process: response to light stimulus SoyBaseN/AISS
GO:0009611GO-bp Annotation by Michelle Graham. GO Biological Process: response to wounding SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009845GO-bp Annotation by Michelle Graham. GO Biological Process: seed germination SoyBaseN/AISS
GO:0010053GO-bp Annotation by Michelle Graham. GO Biological Process: root epidermal cell differentiation SoyBaseN/AISS
GO:0010498GO-bp Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0048364GO-bp Annotation by Michelle Graham. GO Biological Process: root development SoyBaseN/AISS
GO:0048767GO-bp Annotation by Michelle Graham. GO Biological Process: root hair elongation SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005856GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoskeleton SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0005200GO-mf Annotation by Michelle Graham. GO Molecular Function: structural constituent of cytoskeleton SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
KOG0676 KOG Actin and related proteins JGI ISS
PTHR11937Panther ACTIN JGI ISS
PTHR11937:SF77Panther ACTIN JGI ISS
PF00022PFAM Actin JGI ISS
UniRef100_Q9SLQ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Actin isoform B n=2 Tax=Fabaceae RepID=Q9SLQ6_MIMPU SoyBaseE_val: 0ISS
UniRef100_UPI000233A2D5UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A2D5 related cluster n=1 Tax=unknown RepID=UPI000233A2D5 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g15520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g15520 not represented in the dataset
Glyma06g15520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15520
ParalogEvidenceComments
Glyma04g39380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g150100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g15520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g15520
>Glyma06g15520.4   sequence type=transcript   gene model=Glyma06g15520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCTCTCTCTCTCTCTCTCTCTCCAGTCCTTCAATTTCAATTTTTGGTCCCAACCTCAATTCCAATTTCAAATACATTACATTACACTCTCACTCTCACACCAACGACACACTCTCTCTTTCCGCATATATATACCCCCTCTCCTTCTCCCCTTCTCTCTTCTCATTCCTCTTTCCTCTTTCTGTAGCCCTCAAGCACCGGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGAGTGAGTGCTAAGCCATCTTCTTCTTCTCACACAAGTTTGGTAAAAAATGGCTGATGCTGAGGATATTCAACCCCTTGTTTGTGACAATGGAACTGGAATGGTGAAGGCAGGATTTGCTGTGACGATGCTCCTAGGGCTGTGTTTCCCAGTATTGTTGGTCGACCTCGTCATACTGGTGTTATGGTTGGGATGGGTCAAAAGGATGCCTATGTAGGTGATGAAGCCCAGTCAAAAAGAGGTATTCTTACTTTGAAGTACCCAATCGAGCATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTAACTGAGGCTCCACTCAACCCAAAGGCCAACCGAGAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCGCGATCTGACTGACTCTTTGATGAAGATCCTCACCGAGAGAGGTTACATGTTCACCACCTCTGCTGAGCGGGAAATTGTTCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCTTGGATTATGAGCAAGAACTCGAGACTGCAAAGAGCAGTTCTTCAGTTGAGAAAAACTACGAGCTTCCTGATGGGCAAGTTATCACCATTGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTTTTCCAGCCTTCTATGATTGGAATGGAAGCTGCTGGAATTCACGAGACCACCTACAACTCCATCATGAAGTGTGATGTGGATATTAGGAAGGATCTGTATGGTAACATTGTTCTTAGTGGTGGCTCAACTATGTTCCCTGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCACTTGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTCTGGATTGGAGGATCAATCCTTGCGTCCCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGTGAATATGATGAGTCTGGTCCATCCATCGTCCACAGGAAGTGCTTCTAAGTCAAAAAGAAATGCTTTAATGGTGAGTTATGTTTTTGCTGTGGTTGCTTTTTTGGTGTCTGTGTCATATCATGCGAACTATGTTGTCATGGATAAGAGGTGGGATAGGATTGGAGGGTATATTCGGAGCTGTGATGTATCATATATTGTGTGGCATCCCTCTGGATGTGGCGGGCACAGAATTGATGAGAAGCATTTTTCACCTTGGAATTCATCAATGTCTTCGAAAGTAGGTTGTCTGTAGCAAAGGAGTGATTGTGAATGCTTATTTTATTTTCTATGTATCCTTTTTCAGAGTTCACATTTTTTTTGGCCTTCGGAACATTAATGTGAATGTCTATAGCTACATGTATCGAGAATTTTATATAAGATTGTCAGTTCGCACTCAAATTATCAAATTTTAGTTTATTCATGAATCACTTGCCCGATATTTGAGTGTGCTATAGGCATGAAGACACACTTAAAAGTTGTAATGGTGAGGATACCTGCACGATCCCTGGTTTACCAGGAGTCCAAGGGAAGGGAAAATATCTAAATACTCTAATTTTGCTATCGGTTAAATTTAATTTTAATATTTTTTAGTATTGAGTTTATTAA
Coding sequences of Glyma06g15520
>Glyma06g15520.3   sequence type=CDS   gene model=Glyma06g15520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGGATGGGTCAAAAGGATGCCTATGTAGGTGATGAAGCCCAGTCAAAAAGAGGTATTCTTACTTTGAAGTACCCAATCGAGCATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTAACTGAGGCTCCACTCAACCCAAAGGCCAACCGAGAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCGCGATCTGACTGACTCTTTGATGAAGATCCTCACCGAGAGAGGTTACATGTTCACCACCTCTGCTGAGCGGGAAATTGTTCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCTTGGATTATGAGCAAGAACTCGAGACTGCAAAGAGCAGTTCTTCAGTTGAGAAAAACTACGAGCTTCCTGATGGGCAAGTTATCACCATTGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTTTTCCAGCCTTCTATGATTGGAATGGAAGCTGCTGGAATTCACGAGACCACCTACAACTCCATCATGAAGTGTGATGTGGATATTAGGAAGGATCTGTATGGTAACATTGTTCTTAGTGGTGGCTCAACTATGTTCCCTGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCACTTGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTCTGGATTGGAGGATCAATCCTTGCGTCCCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGTGAATATGATGAGTCTGGTCCATCCATCGTCCACAGGAAGTGCTTCTAA

>Glyma06g15520.4   sequence type=CDS   gene model=Glyma06g15520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGGGATGGGTCAAAAGGATGCCTATGTAGGTGATGAAGCCCAGTCAAAAAGAGGTATTCTTACTTTGAAGTACCCAATCGAGCATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATCTGGCATCACACATTTTACAATGAATTGCGTGTTGCTCCTGAGGAGCACCCAGTGCTTCTAACTGAGGCTCCACTCAACCCAAAGGCCAACCGAGAAAAAATGACCCAAATCATGTTTGAGACCTTCAATGTGCCTGCCATGTATGTGGCCATCCAGGCTGTCCTCTCCCTATATGCAAGTGGTCGCACAACTGGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCGCGATCTGACTGACTCTTTGATGAAGATCCTCACCGAGAGAGGTTACATGTTCACCACCTCTGCTGAGCGGGAAATTGTTCGTGACATGAAGGAGAAGCTTGCTTATGTTGCCTTGGATTATGAGCAAGAACTCGAGACTGCAAAGAGCAGTTCTTCAGTTGAGAAAAACTACGAGCTTCCTGATGGGCAAGTTATCACCATTGGAGCTGAGAGATTCCGTTGCCCTGAAGTTCTTTTCCAGCCTTCTATGATTGGAATGGAAGCTGCTGGAATTCACGAGACCACCTACAACTCCATCATGAAGTGTGATGTGGATATTAGGAAGGATCTGTATGGTAACATTGTTCTTAGTGGTGGCTCAACTATGTTCCCTGGTATTGCTGACCGTATGAGCAAGGAGATCACTGCACTTGCTCCTAGCAGCATGAAGATTAAGGTTGTGGCTCCACCAGAGAGAAAGTATAGTGTCTGGATTGGAGGATCAATCCTTGCGTCCCTCAGCACCTTCCAGCAGATGTGGATTTCAAAGGGTGAATATGATGAGTCTGGTCCATCCATCGTCCACAGGAAGTGCTTCTAA
Predicted protein sequences of Glyma06g15520
>Glyma06g15520.3   sequence type=predicted peptide   gene model=Glyma06g15520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF*

>Glyma06g15520.4   sequence type=predicted peptide   gene model=Glyma06g15520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDSLMKILTERGYMFTTSAEREIVRDMKEKLAYVALDYEQELETAKSSSSVEKNYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF*






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