Glyma06g15500 - SoyBase

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Report for Sequence Feature Glyma06g15500

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12212051
stop:	12214793
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15500

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76880	AT	Annotation by Michelle Graham. TAIR10: Duplicated homeodomain-like superfamily protein \| chr1:28865594-28867931 FORWARD LENGTH=603	SoyBase	E_val: 1.00E-112	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
KOG4282	KOG	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain	JGI		ISS
PF10545	PFAM	Alcohol dehydrogenase transcription factor Myb/SANT-like	JGI		ISS
UniRef100_B0EW03	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Trihelix transcription factor n=1 Tax=Glycine max RepID=B0EW03_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KBF6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBF6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g15500

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15500

Paralog	Evidence	Comments
Glyma04g39400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15500 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g149900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15500

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g15500

Limit To All Plant Sequences

>Glyma06g15500.2   sequence type=transcript   gene model=Glyma06g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATCTGATCTTCTCCCTCTCCTCCATTTCACTTCTTTTTTAAATCTCAATTTTTTTTAAATCAAGTTTAAAATATATATTATAATCCCCCCCTTATTATTATTATTCACCTTTCAAATTTCAAGATGCTCTCTCTCTCCCCCTTGTTTTAAACTTGTAAATAATGGTATGGTAGAAGTAGTAGTAGCCCTTCAAATTTCAAACTGAAATAGCACAAACAATACCAACTCTCCTCATACCAAAACACACAACTCCAGTTATTGAAATTGAAATTACCCTTTTCCTTTTTTCCCCCAAATTTCACCCGAGGCTGTTTTTTTTTCTTTTTTTTTTTTCTCTCTTTTGACCTTACCCTTTGAGAGTTTCGTGGCTGTAATTTCGTTGTAACCGATGCTGGAAATCTCAACTTTACCGGAAACCGCGACGGAGAACGCGGACGGCGGTTCCGCGGCGGTATCCGACGGGTCGAAAGCGGAGCACAGCGAAGACGGTGACCGGAATTCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTCAAAGACGCAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAGTTAGCAGAGCTAGGATATAATAGAAGTGCTAAGAAGTGCAAGGAGAAATTCGAGAACGTTTACAAGTACCATAGGAGAACCAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTATCGATTTTTCGAGCAGTTGGAAGCCTTAGACGGAAACCACTCACTTCCTCCTCCGACAACAACAACCGACAACAACAACAACGTTGATGATGATGATGTTATCCTCAACGCGGTTCCGTGTTCCGTTATAGCTGCGGCGGCGCACGAGCATTCGAGTTCGACGACGTCGTCTTCGGGGAAGATGAAGAGAAAGCTGACGCGGTTTCTGGAGGGGCTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGAAAGTTCATGGAAGTGTTGGATAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTCGAGAGGATCAAGAAAGAACGCGAGCTTCTCGCTCATGAAAGATCAATTGCTGCCGCCAAAGATGAAGCTGTTCTTGCTTTTCTTAAAAAGTTCGCAGAAGCAGAAGGCACGGTGCAGTTGCTCGAGAAAATTCAGGTTCAGAACGACAAACAGAAAAACAAGCATCAAAATGGTGCTAATGCTAATAGAGGTGGTGATGTCACGGTTGTCACTGATATGGATAAACAAGAATGTGGAAATAATGGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTAAGGACTGAGTTTGATGTGCAGGCACAAGGGAATAATAATAATAGTAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCTATGAAGAGCATTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAGACGTGTCCTTATTATCACCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGTGGATCATGGGAACGAGTTGAAGCCTGAGGAGCTGTTAATGCATATCATGGAAAGTCAAAGTCAGGAACAGCAGCAAGAGATGCAGACTCAGACTCAGTCATCATCTGAAGATGCTGAGAGAGATCAGGATCAGAATCAGGATCAAAGTGGGTATCAGAATCAGATGGTTGATAATAATAATAATAATAATAGTCCTTCTTCCATTGCAATTATGAGTTAAAAAGCTTCGTTTCAAGAGATTCTTTCTTTAATATGCTAAAATTGAACATCTTCTCTGATGACAAGCAACGTGGGGGTTCCTTTGACTTTACAATCATTTATCAAACTTGTTGGATTGGAGGGGGTTATGAATCTTATGATGGGTCGGAGTCATCAACAACAGCAAGAGTAGATTTCAATATTTTATTTTGTTGCTGGGTTTAGCGAACATGGTAGATGATACAAGGAACACGCGCACAGAGAAAGAGAGAGAGAGAGAGATTTGCCCCTCTGTAAAAAACAAAGTCACTGGGCGTGTTATTTTAATTTGATATTTTAAATTTTTCCCTAGAAGTTTGTAAACCCATGTGTGATCAGGTGGGAAATGGTTGGATTTGTATGCTTGTGACAATAAAGGATAGCATAGTGGCGAACAGTGAACTGCAATGATAATGAAAGTGCATGTTTGTTTTGAGTTATAATAATATTTTTACAATAAATTTATTTTGTAATCTTCTTTATCAATTCATTTATCTTATCTCACACTTTTTCTCTTTCTCTTCTTATCTTTTCTTCCTTTTGTATCTTTTCAATTTGTAAAAT

Coding sequences of Glyma06g15500

Limit To All Plant Sequences

>Glyma06g15500.1   sequence type=CDS   gene model=Glyma06g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAAATCTCAACTTTACCGGAAACCGCGACGGAGAACGCGGACGGCGGTTCCGCGGCGGTATCCGACGGGTCGAAAGCGGAGCACAGCGAAGACGGTGACCGGAATTCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTCAAAGACGCAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAGTTAGCAGAGCTAGGATATAATAGAAGTGCTAAGAAGTGCAAGGAGAAATTCGAGAACGTTTACAAGTACCATAGGAGAACCAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTATCGATTTTTCGAGCAGTTGGAAGCCTTAGACGGAAACCACTCACTTCCTCCTCCGACAACAACAACCGACAACAACAACAACGTTGATGATGATGATGTTATCCTCAACGCGGTTCCGTGTTCCGTTATAGCTGCGGCGGCGCACGAGCATTCGAGTTCGACGACGTCGTCTTCGGGGAAGATGAAGAGAAAGCTGACGCGGTTTCTGGAGGGGCTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGAAAGTTCATGGAAGTGTTGGATAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTCGAGAGGATCAAGAAAGAACGCGAGCTTCTCGCTCATGAAAGATCAATTGCTGCCGCCAAAGATGAAGCTGTTCTTGCTTTTCTTAAAAAGTTCGCAGAAGCAGAAGGCACGGTGCAGTTGCTCGAGAAAATTCAGGTTCAGAACGACAAACAGAAAAACAAGCATCAAAATGGTGCTAATGCTAATAGAGGTGGTGATGTCACGGTTGTCACTGATATGGATAAACAAGAATGTGGAAATAATGGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTAAGGACTGAGTTTGATGTGCAGGCACAAGGGAATAATAATAATAGTAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCTATGAAGAGCATTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAGACGTGTCCTTATTATCACCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGTGGATCATGGGAACGAGTTGAAGCCTGAGGAGCTGTTAATGCATATCATGGAAAGTCAAAGTCAGGAACAGCAGCAAGAGATGCAGACTCAGACTCAGTCATCATCTGAAGATGCTGAGAGAGATCAGGATCAGAATCAGGATCAAAGTGGGTATCAGAATCAGATGGTTGATAATAATAATAATAATAATAGTCCTTCTTCCATTGCAATTATGAGTTAA

>Glyma06g15500.2   sequence type=CDS   gene model=Glyma06g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGGAAATCTCAACTTTACCGGAAACCGCGACGGAGAACGCGGACGGCGGTTCCGCGGCGGTATCCGACGGGTCGAAAGCGGAGCACAGCGAAGACGGTGACCGGAATTCCGCCGCGAACCGGTGGCCGAGAGAGGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTCAAAGACGCAAACCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAGTTAGCAGAGCTAGGATATAATAGAAGTGCTAAGAAGTGCAAGGAGAAATTCGAGAACGTTTACAAGTACCATAGGAGAACCAAAGAAGGTCGTTTTGGAAAATCAAACGGTGCAAAAACTTATCGATTTTTCGAGCAGTTGGAAGCCTTAGACGGAAACCACTCACTTCCTCCTCCGACAACAACAACCGACAACAACAACAACGTTGATGATGATGATGTTATCCTCAACGCGGTTCCGTGTTCCGTTATAGCTGCGGCGGCGCACGAGCATTCGAGTTCGACGACGTCGTCTTCGGGGAAGATGAAGAGAAAGCTGACGCGGTTTCTGGAGGGGCTGATGAGGGAAGTGATAGAGAAGCAAGAGACGCTGCAGAGAAAGTTCATGGAAGTGTTGGATAAGTGTGAAAAAGATCGAATGGCGAGGGAGGAAGCGTGGAAGAAGGAGGAGCTCGAGAGGATCAAGAAAGAACGCGAGCTTCTCGCTCATGAAAGATCAATTGCTGCCGCCAAAGATGAAGCTGTTCTTGCTTTTCTTAAAAAGTTCGCAGAAGCAGAAGGCACGGTGCAGTTGCTCGAGAAAATTCAGGTTCAGAACGACAAACAGAAAAACAAGCATCAAAATGGTGCTAATGCTAATAGAGGTGGTGATGTCACGGTTGTCACTGATATGGATAAACAAGAATGTGGAAATAATGGTGTTAGTGTTGGGAATTTTGTGCACATGAGTAGTTCGCGGTGGCCGAAGGATGAAGTGGAGGCTTTGATAAGGTTAAGGACTGAGTTTGATGTGCAGGCACAAGGGAATAATAATAATAGTAATAATGGGTCTAAAGGGCCTCTTTGGGAGGAGATATCTTTGGCTATGAAGAGCATTGGTTATGATCGAAGTGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATAAAGGAGAAGAACAAGAGGAAACCTCAGGATTCCAAGACGTGTCCTTATTATCACCACCTTGAGGCTTTGTACAGTAAGAAGCCTAAGAAGGTGGTGGATCATGGGAACGAGTTGAAGCCTGAGGAGCTGTTAATGCATATCATGGAAAGTCAAAGTCAGGAACAGCAGCAAGAGATGCAGACTCAGACTCAGTCATCATCTGAAGATGCTGAGAGAGATCAGGATCAGAATCAGGATCAAAGTGGGTATCAGAATCAGATGGTTGATAATAATAATAATAATAATAGTCCTTCTTCCATTGCAATTATGAGTTAA

Predicted protein sequences of Glyma06g15500

Limit To All Plant Sequences

>Glyma06g15500.1   sequence type=predicted peptide   gene model=Glyma06g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEISTLPETATENADGGSAAVSDGSKAEHSEDGDRNSAANRWPREETMALLKIRSEMDVAFKDANPKAPLWEQVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLPPPTTTTDNNNNVDDDDVILNAVPCSVIAAAAHEHSSSTTSSSGKMKRKLTRFLEGLMREVIEKQETLQRKFMEVLDKCEKDRMAREEAWKKEELERIKKERELLAHERSIAAAKDEAVLAFLKKFAEAEGTVQLLEKIQVQNDKQKNKHQNGANANRGGDVTVVTDMDKQECGNNGVSVGNFVHMSSSRWPKDEVEALIRLRTEFDVQAQGNNNNSNNGSKGPLWEEISLAMKSIGYDRSAKRCKEKWENINKYFKRIKEKNKRKPQDSKTCPYYHHLEALYSKKPKKVVDHGNELKPEELLMHIMESQSQEQQQEMQTQTQSSSEDAERDQDQNQDQSGYQNQMVDNNNNNNSPSSIAIMS*

>Glyma06g15500.2   sequence type=predicted peptide   gene model=Glyma06g15500   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLEISTLPETATENADGGSAAVSDGSKAEHSEDGDRNSAANRWPREETMALLKIRSEMDVAFKDANPKAPLWEQVSRKLAELGYNRSAKKCKEKFENVYKYHRRTKEGRFGKSNGAKTYRFFEQLEALDGNHSLPPPTTTTDNNNNVDDDDVILNAVPCSVIAAAAHEHSSSTTSSSGKMKRKLTRFLEGLMREVIEKQETLQRKFMEVLDKCEKDRMAREEAWKKEELERIKKERELLAHERSIAAAKDEAVLAFLKKFAEAEGTVQLLEKIQVQNDKQKNKHQNGANANRGGDVTVVTDMDKQECGNNGVSVGNFVHMSSSRWPKDEVEALIRLRTEFDVQAQGNNNNSNNGSKGPLWEEISLAMKSIGYDRSAKRCKEKWENINKYFKRIKEKNKRKPQDSKTCPYYHHLEALYSKKPKKVVDHGNELKPEELLMHIMESQSQEQQQEMQTQTQSSSEDAERDQDQNQDQSGYQNQMVDNNNNNNSPSSIAIMS*

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