Glyma06g15480 - SoyBase

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Report for Sequence Feature Glyma06g15480

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12205164
stop:	12207314
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15480

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G18465	AT	Annotation by Michelle Graham. TAIR10: Chaperone DnaJ-domain superfamily protein \| chr2:8003223-8004742 REVERSE LENGTH=268	SoyBase	E_val: 9.00E-36	ISS
GO:0006457	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein folding	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0031072	GO-mf	Annotation by Michelle Graham. GO Molecular Function: heat shock protein binding	SoyBase	N/A	ISS
PTHR25040	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR25040:SF66	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00226	PFAM	DnaJ domain	JGI		ISS
UniRef100_B9S885	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein binding protein, putative n=1 Tax=Ricinus communis RepID=B9S885_RICCO	SoyBase	E_val: 9.00E-54	ISS
UniRef100_I1L2R3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1L2R3_SOYBN	SoyBase	E_val: 2.00E-96	ISS

Expression Patterns of Glyma06g15480

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15480

Paralog	Evidence	Comments
Glyma04g39420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15480 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g149700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15480

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g15480

Limit To All Plant Sequences

>Glyma06g15480.2   sequence type=CDS   gene model=Glyma06g15480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAGTATGGATACCAAGGTAGTTTTTCCAATAAAGGTCAACCAAAATCTGGTCAGCATTCTGGTGGAAAACCACAAACGAAAACTAAACAAACTTTCAACGAGGACTTTGATGGCCATCCTGAGCAAATATTCCAGGCAACATTTGGTAACAAATGGTATACATGGTCCTTCAACAATTGGAGCGGTTTTTCCTCTGAACATTCCACGTCTGGGTTTGAATGGAGGGAACATTCAAATAGAACAAACAAGTGGAAAAATGAAAGTGATATTGAGCATGATGATGATGATGACTCATGTGTAGGATCATGTTCTGATAGAACTGTTCTGGGTCTGCCTCCAACAGGTCCATTAAAGATTGAAGATGTTAAAAATGCTTTCCAGTTATCAGCTTTAAAATGGCATCCTGATAAGCATCAAGGCCCTTCCCAGGCAATGGCTGAAGAAAAATTCAAACTGTGTGTAAATGCTTACAAAACATTATGCAATGCTCTCTCCCCATCTTAG

Predicted protein sequences of Glyma06g15480

Limit To All Plant Sequences

>Glyma06g15480.2   sequence type=predicted peptide   gene model=Glyma06g15480   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
KYGYQGSFSNKGQPKSGQHSGGKPQTKTKQTFNEDFDGHPEQIFQATFGNKWYTWSFNNWSGFSSEHSTSGFEWREHSNRTNKWKNESDIEHDDDDDSCVGSCSDRTVLGLPPTGPLKIEDVKNAFQLSALKWHPDKHQGPSQAMAEEKFKLCVNAYKTLCNALSPS*

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