Glyma06g15470 - SoyBase

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Report for Sequence Feature Glyma06g15470

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12194475
stop:	12197375
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64700	AT	Annotation by Michelle Graham. TAIR10: nodulin MtN21 /EamA-like transporter family protein \| chr5:25865190-25866845 REVERSE LENGTH=359	SoyBase	E_val: 2.00E-125	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
UniRef100_G7LC96	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin-induced protein 5NG4 n=2 Tax=Medicago truncatula RepID=G7LC96_MEDTR	SoyBase	E_val: 9.00E-176	ISS
UniRef100_UPI00023381AE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023381AE related cluster n=1 Tax=unknown RepID=UPI00023381AE	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g15470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g15470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g149600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g15470

Limit To All Plant Sequences

>Glyma06g15470.3   sequence type=transcript   gene model=Glyma06g15470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCTTAATTAAAAGGCAAACCTTTGTACATGTGCGTTGTTTTGAAACATCTCATCACCACACTAATTATCTCACACTCAAAGCTATAGACCAAATTAAAATGAAAGGAAACAACCCCTATTTGGTTGTGATTCTCATACAAACCATATATGCTGCTATGATTCTTCTCTCAAAAGTGGCATTCGATCATGGCATGGACAGTTTTATCTTCGTCTTCTATAGACAGGCAGCAGCAACCCTCTTTTTGACCCCTTTCACTTTCTTCTTCGAATGGATTACTTTAACCTTGGAAATATATGGTATCGCCCTTATTTACACTTCAGTAACTTTGGCTGCTGCTACTTCAAACTCTCTTCCAGCAATCACCTTCTTCTTGGCACTCCTACTAAGGATTGAGAGTTTGAAAATAAAGACGACCCCTGGGATTGTTAAGTTGATAGGCATTGTGGCATGCTTGGCTGGTGCAGCAACCCTTGCCTTTTATAAAGGTCCTCCTTTGAAATTTTTAAGCCATTATCACCTTTTGGATTACCATAAAACCCTACAACATCAAGGTCGTGCTCCATCCGGTGCGTGGATAAAGGGTTGCTTCCTCATGATCCTCTCCAACACGTGTTTCGGGCTATGGTTTGTACTACAGGCTTTTATTATAAAAGTATACCCTTCAAAGCTGCTCTTCACAACTATTCAGTGTTTCTTAAGCTCAATTCAGTCTTTGGTCATTGCCTTGGCAGTAGAAAGGGACATTGAGCAATGGAAGTTAGGTTGGAATGCCAGGCTCCTCGCCGTATTATATTGTGGAATTATGGTCACGGGCGTAACATACTACTTACAAACATGGGTTATAGAGAAGAAAGGACCCGTGTTTCTAGCCATGTCAACTCCACTGGTTCTTATTATTACAACCTTCGCTTCTGCAACCATCTTGGGTGAGATTATCAGTTTGGGAAGTCTTCTCGGAGGATTCATATTGATTCTAGGATTGTACAGCGTATTGTGGGGAAAGAGCAAAGAGCATCACATGCCAAAAGTCTCACTAGACGTGGAGCAAACATCGAGTAATTAAATGAGAATCATGAGATTGCAATTGTGATGATATGCGGAGAACCACGGAAGAAAGGGATGGATATATACTTTGGAGTGATGCAAAAAATTTGCTAGCAACTAATATATCATAGCATTAAAGCGCTTAAAGCCTACAGAGATTTGCCAAAGACAAAATGTAAATGTAAATGCTTGACTGACCCCTTTTTTTTTTGGCGAAAACAAGGGGTCAATTATCTTTCCATCACAATATATATATATATGATAAATCAAGCTAAAATACTAGAGAAGAGTCTTCTTTTTTTTAACCCAAATATTAATTTTAAAATTATAA

Coding sequences of Glyma06g15470

Limit To All Plant Sequences

>Glyma06g15470.2   sequence type=CDS   gene model=Glyma06g15470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAAACAACCCCTATTTGGTTGTGATTCTCATACAAACCATATATGCTGCTATGATTCTTCTCTCAAAAGTGGCATTCGATCATGGCATGGACAGTTTTATCTTCGTCTTCTATAGACAGGCAGCAGCAACCCTCTTTTTGACCCCTTTCACTTTCTTCTTCGAATGGAAAACTGCACCACCTATGCCTTTTTGGACCTTCTGCAAGATTTTTTTCATTTCTTTATTTGGGATTACTTTAACCTTGGAAATATATGGTATCGCCCTTATTTACACTTCAGTAACTTTGGCTGCTGCTACTTCAAACTCTCTTCCAGCAATCACCTTCTTCTTGGCACTCCTACTAAGGATTGAGAGTTTGAAAATAAAGACGACCCCTGGGATTGTTAAGTTGATAGGCATTGTGGCATGCTTGGCTGGTGCAGCAACCCTTGCCTTTTATAAAGGTCCTCCTTTGAAATTTTTAAGCCATTATCACCTTTTGGATTACCATAAAACCCTACAACATCAAGGTCGTGCTCCATCCGGTGCGTGGATAAAGGGTTGCTTCCTCATGATCCTCTCCAACACGTGTTTCGGGCTATGGTTTGTACTACAGGCTTTTATTATAAAAGTATACCCTTCAAAGCTGCTCTTCACAACTATTCAGTGTTTCTTAAGCTCAATTCAGTCTTTGGTCATTGCCTTGGCAGTAGAAAGGGACATTGAGCAATGGAAGTTAGGTTGGAATGCCAGGCTCCTCGCCGTATTATATTGTGGAATTATGGTCACGGGCGTAACATACTACTTACAAACATGGGTTATAGAGAAGAAAGGACCCGTGTTTCTAGCCATGTCAACTCCACTGGTTCTTATTATTACAACCTTCGCTTCTGCAACCATCTTGGGTGAGATTATCAGTTTGGGAAGTCTTCTCGGAGGATTCATATTGATTCTAGGATTGTACAGCGTATTGTGGGGAAAGAGCAAAGAGCATCACATGCCAAAAGTCTCACTAGACGTGGAGCAAACATCGAGTAATTAA

>Glyma06g15470.3   sequence type=CDS   gene model=Glyma06g15470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAGGAAACAACCCCTATTTGGTTGTGATTCTCATACAAACCATATATGCTGCTATGATTCTTCTCTCAAAAGTGGCATTCGATCATGGCATGGACAGTTTTATCTTCGTCTTCTATAGACAGGCAGCAGCAACCCTCTTTTTGACCCCTTTCACTTTCTTCTTCGAATGGATTACTTTAACCTTGGAAATATATGGTATCGCCCTTATTTACACTTCAGTAACTTTGGCTGCTGCTACTTCAAACTCTCTTCCAGCAATCACCTTCTTCTTGGCACTCCTACTAAGGATTGAGAGTTTGAAAATAAAGACGACCCCTGGGATTGTTAAGTTGATAGGCATTGTGGCATGCTTGGCTGGTGCAGCAACCCTTGCCTTTTATAAAGGTCCTCCTTTGAAATTTTTAAGCCATTATCACCTTTTGGATTACCATAAAACCCTACAACATCAAGGTCGTGCTCCATCCGGTGCGTGGATAAAGGGTTGCTTCCTCATGATCCTCTCCAACACGTGTTTCGGGCTATGGTTTGTACTACAGGCTTTTATTATAAAAGTATACCCTTCAAAGCTGCTCTTCACAACTATTCAGTGTTTCTTAAGCTCAATTCAGTCTTTGGTCATTGCCTTGGCAGTAGAAAGGGACATTGAGCAATGGAAGTTAGGTTGGAATGCCAGGCTCCTCGCCGTATTATATTGTGGAATTATGGTCACGGGCGTAACATACTACTTACAAACATGGGTTATAGAGAAGAAAGGACCCGTGTTTCTAGCCATGTCAACTCCACTGGTTCTTATTATTACAACCTTCGCTTCTGCAACCATCTTGGGTGAGATTATCAGTTTGGGAAGTCTTCTCGGAGGATTCATATTGATTCTAGGATTGTACAGCGTATTGTGGGGAAAGAGCAAAGAGCATCACATGCCAAAAGTCTCACTAGACGTGGAGCAAACATCGAGTAATTAA

Predicted protein sequences of Glyma06g15470

Limit To All Plant Sequences

>Glyma06g15470.2   sequence type=predicted peptide   gene model=Glyma06g15470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGNNPYLVVILIQTIYAAMILLSKVAFDHGMDSFIFVFYRQAAATLFLTPFTFFFEWKTAPPMPFWTFCKIFFISLFGITLTLEIYGIALIYTSVTLAAATSNSLPAITFFLALLLRIESLKIKTTPGIVKLIGIVACLAGAATLAFYKGPPLKFLSHYHLLDYHKTLQHQGRAPSGAWIKGCFLMILSNTCFGLWFVLQAFIIKVYPSKLLFTTIQCFLSSIQSLVIALAVERDIEQWKLGWNARLLAVLYCGIMVTGVTYYLQTWVIEKKGPVFLAMSTPLVLIITTFASATILGEIISLGSLLGGFILILGLYSVLWGKSKEHHMPKVSLDVEQTSSN*

>Glyma06g15470.3   sequence type=predicted peptide   gene model=Glyma06g15470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKGNNPYLVVILIQTIYAAMILLSKVAFDHGMDSFIFVFYRQAAATLFLTPFTFFFEWITLTLEIYGIALIYTSVTLAAATSNSLPAITFFLALLLRIESLKIKTTPGIVKLIGIVACLAGAATLAFYKGPPLKFLSHYHLLDYHKTLQHQGRAPSGAWIKGCFLMILSNTCFGLWFVLQAFIIKVYPSKLLFTTIQCFLSSIQSLVIALAVERDIEQWKLGWNARLLAVLYCGIMVTGVTYYLQTWVIEKKGPVFLAMSTPLVLIITTFASATILGEIISLGSLLGGFILILGLYSVLWGKSKEHHMPKVSLDVEQTSSN*

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