Glyma06g15411 - SoyBase

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Report for Sequence Feature Glyma06g15411

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12155839
stop:	12158871
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15411

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
PF08787	PFAM	Alginate lyase	JGI		ISS
UniRef100_G7JAV5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Citrate binding protein n=1 Tax=Medicago truncatula RepID=G7JAV5_MEDTR	SoyBase	E_val: 8.00E-83	ISS
UniRef100_I1KBE5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBE5_SOYBN	SoyBase	E_val: 2.00E-163	ISS

Expression Patterns of Glyma06g15411

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g15411 not represented in the dataset	Glyma06g15411 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15411

Paralog	Evidence	Comments
Glyma04g39475	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15411 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g149100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15411

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g15411

Limit To All Plant Sequences

>Glyma06g15411.1   sequence type=CDS   gene model=Glyma06g15411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCCGCAACCCATTTTGCATCTAACCCTTTTGTCATTAATAATCTCTCTGACCACTCTTTCCTTGGTCGATGCCGCCGATCCCACATTTGGCTTCACCCCTCTTGGATTATCTAGTAGCTCAAACTTGCAAATCCAAAAGCCTTACGACGTTGCAGTCAACGAGCGCTACAGCTTTTCAAATGGAGTGCACAGATTTTGGGTATACTCCACGGACAAGCCTCATATGCAAGGCAGCAATACGAAGCCACGAACTGAGATTCAAGATATGGGCACTCTGTATCAGATTGCACTCTTGAACATGGTTCTTTATGTATCATTAATGATGAATCCGACAAACACCTCGTCAATGGACCTAACACTCGGTTTCACTGAACTCCCACTAAACACCACCAATTTCGATCATCATAAGCCCTACGATTTACCCGTTACTGAACGCTACAGCTTCACAGATGGAGTGCACAAACTGTGGGTATATTCCACAGACAAACCTCTCTCCCAAAATAGCACAACACGGCCTAGATCCGAAATCCGCATTAGAGGATATGATTATTCCTCTGGGGTGTGGCAATTTGAAGGGCAGGGGTTTGTGCCAAATGGTACTTCTGGCGTGTGCATCATGCAAGTGTTCGGGGCAGATCCTCCTCGTGCGACAACCCTAATGGTTAGAGCCTACAACGATTCGCTTAAGTATTATGAGGCTCCAATCCTTGTTCCAAACATATGGGGAAGATGGTTTCAGTTAAATGTGATCCACGATGTGGAGGCCTCAAATGTGAAGGTTTATTTTGATAGGGTTCAGGTTTACGAAGCAACAGGCCATGGCGGTTACTCCCACTACTTCAAATTTGGAGTTTATACTCAAAATGATCCTTCTTACTATATGGAGTCCCAGTGGAAAGGAATTAAAGTTCTCAAAAATGTGCATGAATGA

Predicted protein sequences of Glyma06g15411

Limit To All Plant Sequences

>Glyma06g15411.1   sequence type=predicted peptide   gene model=Glyma06g15411   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVPQPILHLTLLSLIISLTTLSLVDAADPTFGFTPLGLSSSSNLQIQKPYDVAVNERYSFSNGVHRFWVYSTDKPHMQGSNTKPRTEIQDMGTLYQIALLNMVLYVSLMMNPTNTSSMDLTLGFTELPLNTTNFDHHKPYDLPVTERYSFTDGVHKLWVYSTDKPLSQNSTTRPRSEIRIRGYDYSSGVWQFEGQGFVPNGTSGVCIMQVFGADPPRATTLMVRAYNDSLKYYEAPILVPNIWGRWFQLNVIHDVEASNVKVYFDRVQVYEATGHGGYSHYFKFGVYTQNDPSYYMESQWKGIKVLKNVHE*

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