Glyma06g15380 - SoyBase

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Report for Sequence Feature Glyma06g15380

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12130879
stop:	12134556
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15380

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G76010	AT	Annotation by Michelle Graham. TAIR10: Alba DNA/RNA-binding protein \| chr1:28528505-28530488 REVERSE LENGTH=350	SoyBase	E_val: 4.00E-74	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
KOG2567	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR13516	Panther	RIBONUCLEASE P 25KDA SUBUNIT-RELATED	JGI		ISS
PF01918	PFAM	Alba	JGI		ISS
UniRef100_G7JAE0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonuclease P protein subunit p25 n=1 Tax=Medicago truncatula RepID=G7JAE0_MEDTR	SoyBase	E_val: 1.00E-107	ISS
UniRef100_I1KBE3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBE3_SOYBN	SoyBase	E_val: 3.00E-168	ISS

Expression Patterns of Glyma06g15380

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15380

Paralog	Evidence	Comments
Glyma04g39480	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15380 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g148800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15380

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g15380

Limit To All Plant Sequences

>Glyma06g15380.2   sequence type=transcript   gene model=Glyma06g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCCAAGGGAAAAAAGCCCATTGTTGTAATTAGAAAGAGGAAGAAGAAGGTTAAGTTAATTTGGCGGTCTCTTCGGCGATAAGACCGCAACGTTATAGCCCTACTCACGAGCCTTTTTACTCTGCTCGGTATACAGGGAGAGTGCAACAACAAACGCACCAGATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGACTCCTATAAACGAGAATGAGATACGCGTCACTACTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTAGAGGATTTTACAATGGGGGTATGGAATATGGTGATGATTGGGATGGTGGGCGTGGCTATGGTGGAAGAGGGCGTGGCCGTGCAAGGGGGCGTGCTTTTCGGGGACGAGGACGAGGCTATGGTGTGCAGCCAGTTGGGTACTATGACTATGGTGAATATGATGCTCAACCTCCCCCACGTGGCCGTGGACGTGGAAGGGGGAGAGGTCGTGGACGTGGAAGGGACCGGGGACCACCTGCTTGATCAAGTGGCTGTTTCTTATCATGTATATGTTAAAATTAGATGTTGCCTCTCTGTTTAGTATTTTGTGAGATTTACTTATATTTTGGTATTATGTGAAGCGGTCGGTGTTGCAGCCATGTTCCTGCAGTTTTGATTATGTAGTTGTTTCCCCTGTAACCACTATAATTTTGCTAAGTTGGGTAGAGTAAGTTAGATATCTTTTCTTTGTTTAAAGACTCATAAAATCACAATTGTAAAATTTTTTAATAGGAGTTATTGCAGTAAGGTCTTTCGAAGTTTGATTTAGTGTGATTGGTTTACTGGTTTAATTTATTGAAGAAATGTTATTGTTTGTCAATTTTGTAAGAAAACTTTTAAAAAGCAAGCGATGAAAATTGAAA

>Glyma06g15380.3   sequence type=transcript   gene model=Glyma06g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GGCCCAAGGGAAAAAAGCCCATTGTTGTAATTAGAAAGAGGAAGAAGAAGGTTAAGTTAATTTGGCGGTCTCTTCGGCGATAAGACCGCAACGTTATAGCCCTACTCACGAGCCTTTTTACTCTGCTCGGTATACAGGGAGAGTGCAACAACAAACGCACCAGATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGACTCCTATAAACGAGAATGAGATACGCGTCACTACTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTAGAGGATTTTACAATGGGGGTATGGAATATGGTGATGATTGGGATGGTGGGCGTGGCTATGGTGGAAGAGGGCGTGGCCGTGCAAGGGGGCGTGCTTTTCGGGGACGAGGACGAGGCTATGGTGTGCAGCCAGTTGGGTACTATGACTATGGTGAATATGATGCTCAACCTCCCCCACGTGGCCGTGGACGTGGAAGGGGGAGAGGTCGTGGACGTGGAAGGGACCGGGGACCACCTGCTTGATCAAGTGGCTGTTTCTTATCATGTATATGTTAAAATTAGATGTTGCCTCTCTGTTTAGTATTTTGTGAGATTTACTTATATTTTGGTATTATGTGAAGCGGTCGGTGTTGCAGCCATGTTCCTGCAGTTTTGATTATGTAGTTGTTTCCCCTGTAACCACTATAATTTTGCTAAGTTGGGTAGAGTAAGTTAGATATCTTTTCTTTGTTTAAAGACTCATAAAATCACAATTGTAAAATTTTTTAATAGGAGTTATTGCAGTAAGGTCTTTCGAAGTTTGATTTAGTGTGATTGGTTTACTGGTTTAATTTATTGAAGAAATGTTATTGTTTGTCAATTTTGTAAGAAAACTTTTAAAAAGCAAGCGATGAAAATTGAAA

Coding sequences of Glyma06g15380

Limit To All Plant Sequences

>Glyma06g15380.1   sequence type=CDS   gene model=Glyma06g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGACTCCTATAAACGAGAATGAGATACGCGTCACTACTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTAGAGGATTTTACAATGGGGGTATGGAATATGGTGATGATTGGGATGGTGGGCGTGGCTATGGTGGAAGAGGGCGTGGCCGTGCAAGGGGGCGTGCTTTTCGGGGACGAGGACGAGGCTATGGTGTGCAGCCAGTTGGGTACTATGACTATGGTGAATATGATGCTCAACCTCCCCCACGTGGCCGTGGACGTGGAAGGGGGAGAGGTCGTGGACGTGGAAGGGACCGGGGACCACCTGCTTGA

>Glyma06g15380.2   sequence type=CDS   gene model=Glyma06g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGACTCCTATAAACGAGAATGAGATACGCGTCACTACTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTAGAGGATTTTACAATGGGGGTATGGAATATGGTGATGATTGGGATGGTGGGCGTGGCTATGGTGGAAGAGGGCGTGGCCGTGCAAGGGGGCGTGCTTTTCGGGGACGAGGACGAGGCTATGGTGTGCAGCCAGTTGGGTACTATGACTATGGTGAATATGATGCTCAACCTCCCCCACGTGGCCGTGGACGTGGAAGGGGGAGAGGTCGTGGACGTGGAAGGGACCGGGGACCACCTGCTTGA

>Glyma06g15380.3   sequence type=CDS   gene model=Glyma06g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGGTATCAGAGGGTAGAGAAGCCCAAGGCAGAGACTCCTATAAACGAGAATGAGATACGCGTCACTACTCAAGGAAGGATGAGGAATTACATCACCTACGCCACCACTCTCCTCCAGGAGAAAGGATCTAGTGAAATTGTTCTCAAAGCAATGGGACGTGCAATAAATAAGACCGTAATGATTGCTGAACTGATCAAGAGAAGGATTGTTGGTCTGCATCAAAACACCCAAATTGGATCAACTGATATAACTGACACATGGGAACCACTAGAAGAAGGCCTTCTTCCTTTGGAGACTACTCGCCATGTTTCAATGATCACAATTACCTTGTCAAAGAAAGAATTGGATACGTCATCCGCGGGATACCAACATCCTCTTCCAGTTGATCAAGTAAAACCTTTAAATGAATATGAAGAGGAAGGAGAAGGCTCACCAAGGATGCGAGGAAGAGGACGTGGTCGTGGAAGGGGCAGGGGTAGAGGATTTTACAATGGGGGTATGGAATATGGTGATGATTGGGATGGTGGGCGTGGCTATGGTGGAAGAGGGCGTGGCCGTGCAAGGGGGCGTGCTTTTCGGGGACGAGGACGAGGCTATGGTGTGCAGCCAGTTGGGTACTATGACTATGGTGAATATGATGCTCAACCTCCCCCACGTGGCCGTGGACGTGGAAGGGGGAGAGGTCGTGGACGTGGAAGGGACCGGGGACCACCTGCTTGA

Predicted protein sequences of Glyma06g15380

Limit To All Plant Sequences

>Glyma06g15380.1   sequence type=predicted peptide   gene model=Glyma06g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSSEIVLKAMGRAINKTVMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSAGYQHPLPVDQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGFYNGGMEYGDDWDGGRGYGGRGRGRARGRAFRGRGRGYGVQPVGYYDYGEYDAQPPPRGRGRGRGRGRGRGRDRGPPA*

>Glyma06g15380.2   sequence type=predicted peptide   gene model=Glyma06g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSSEIVLKAMGRAINKTVMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSAGYQHPLPVDQVKPLNEYEEEGGSPRMRGRGRGRGRGRGRGFYNGGMEYGDDWDGGRGYGGRGRGRARGRAFRGRGRGYGVQPVGYYDYGEYDAQPPPRGRGRGRGRGRGRGRDRGPPA*

>Glyma06g15380.3   sequence type=predicted peptide   gene model=Glyma06g15380   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDRYQRVEKPKAETPINENEIRVTTQGRMRNYITYATTLLQEKGSSEIVLKAMGRAINKTVMIAELIKRRIVGLHQNTQIGSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELDTSSAGYQHPLPVDQVKPLNEYEEEGEGSPRMRGRGRGRGRGRGRGFYNGGMEYGDDWDGGRGYGGRGRGRARGRAFRGRGRGYGVQPVGYYDYGEYDAQPPPRGRGRGRGRGRGRGRDRGPPA*

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