Glyma06g15350 - SoyBase

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Report for Sequence Feature Glyma06g15350

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12109734
stop:	12114779
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21790	AT	Annotation by Michelle Graham. TAIR10: ribonucleotide reductase 1 \| chr2:9293529-9297580 FORWARD LENGTH=816	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006261	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication	SoyBase	N/A	ISS
GO:0007010	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytoskeleton organization	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0009202	GO-bp	Annotation by Michelle Graham. GO Biological Process: deoxyribonucleoside triphosphate biosynthetic process	SoyBase	N/A	ISS
GO:0010498	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal protein catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0055114	GO-bp	Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005971	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribonucleoside-diphosphate reductase complex	SoyBase	N/A	ISS
GO:0004748	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG1112	KOG	Ribonucleotide reductase, alpha subunit	JGI		ISS
PTHR11573	Panther	RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE LARGE CHAIN	JGI		ISS
PF00317	PFAM	Ribonucleotide reductase, all-alpha domain	JGI		ISS
PF02867	PFAM	Ribonucleotide reductase, barrel domain	JGI		ISS
PF03477	PFAM	ATP cone domain	JGI		ISS
UniRef100_I1KBD9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Ribonucleoside-diphosphate reductase n=1 Tax=Glycine max RepID=I1KBD9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_I1KBD9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ribonucleoside-diphosphate reductase n=1 Tax=Glycine max RepID=I1KBD9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g15350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15350

Paralog	Evidence	Comments
Glyma04g39500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g148500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g15350

Limit To All Plant Sequences

>Glyma06g15350.1   sequence type=CDS   gene model=Glyma06g15350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTATGTCGTAAAGAGGAACGGGCGGCAAGAGACGGTTCACTTCGACAAAATAACCGCGCGCCTCAAGAAGCTTAGTTATGGCCTCAGCTCCGATCACTGCGACGCCGTTTTGGTCGCTCAGAAAGTCTGCGCCGGCGTTTACAAAGGCGTCACCACCAGCCAACTTGACGAATTGGCCGCCGAAACTGCTGCCGCCATGACCGCCAACCATCCCGACTACGCTTGCTTGGCTGCTAGGATTGCCGTTTCGAATCTGCACAAGAACACCAAGAAGTCGTTCTCGGAGACGATCAAGATCATGTACTATCATTTTAATGAGAGATCTGGGCTGAAGGCTCCTCTGATCGCCGATGATGTTTATGAAATAATTATGAAGAATGCTGCTCGTCTAGACAGCGAGATAATCTATGACAGGGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCTCTTGAAGGTTCAAGGGCAGGTTTTGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGGATTCACAAGGATGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAACTGAGTAGTTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGGATATATGAAACTTTGAAGGAGTGTGCTATCATCAGCAAATCAGCTGGAGGAATTGGTGTCTCTATTCATGACATTCGTGCTACAGGCAGTTATATTCGTGGGACAAATGGGACATCCAATGGCATTGTCCCGATGTTGCGTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAAAGGAAAGGTGCATTTGCTGTGTACTTGGAGCCATGGCATGCTGATATGTTTGAATTCTTGGATTTAAGGAAAAATCATGGGAAGGAAGAGCATCGTGCTCGAGATCTGTTTTATGCTCTCTGGGTGCCTGATCTCTTTATGGAAAGAGTTCAGAGCAATGGCCAATGGTCTTTGTTTTGTCCCAGTGAAGCACCGGGTTTGACAGATTGTTGGGGTGAGAAATTTGAGGAGCTTTATCTTCAATATGAAAGAGAAGGAAAAGCAATGAAGGTTGTCCAGGCACAGAGCCTCTGGTTCGAAATTCTGAAGTCACAGATAGAAACCGGAACCCCCTACATGCTTTTTAAGGATACTTGCAATAGGAAAAGCAATCAACAGAATTTGGGTACAATTAAATCGTCAAACTTGTGTACTGAGATAATTGAATATTCAAGTCCAACTGAAACTGCTGTGTGCAATCTGGCATCAATTGCACTACCACGATATGTAAGAGAAAAGGGTGTACCAATGGAGTCCCATCCATCCAAGCTTGTTGGAAGCACATGCTCTGGAAATCGGTATTTTGACTTTGATAAACTAGCAGAGATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTGCGGCACAGACCAATTGGTATTGGAGTACAGGGTCTTGCTGATACTTTCATACTCCTTGGCATGGCATTTGATTCACCAGAGGCTCAGCAGTTAAACAAGGAGATATTTGAGACTATATATTATCATGCTCTAAAAACTTCATGTGGTTTGGCTGCAAAGGAAGGTCCCTATGAAACATACAGTGGTAGTCCTATAAGCAAGGGAATTCTTCAGCCGGACATGTGGGGTGTGGCACCCTCAAATCGTTGGGATTGGGATGCACTTCGGGAGATGATATCAAAGAATGGTGTGAGAAACTCACTTCTCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGTGGTGAATTTGTTGTTGTGAACAAGCATCTTCTTCATGACTTGACTGAAATGGGACTGTGGTCTCCTACATTAAAGAATAAGATTATCTATGAAGATGGCTCAGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAAAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAACCCAACTTTGGAAAACTGACTTCCTTGCATTTTTATGCATGGTCCAAGGGTCTAAAAACTGGAATGTATTATCTTCGATCACGTGCTGCAGCTGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAGAGAAAAATCCAATGTGGAGGATGATGATAATACAAAAATGGCACAGATGGTGTGCTCTTTAACAAACCGTGACGAGTGCTTAGCTTGTGGGAGTTGA

Predicted protein sequences of Glyma06g15350

Limit To All Plant Sequences

>Glyma06g15350.1   sequence type=predicted peptide   gene model=Glyma06g15350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MYVVKRNGRQETVHFDKITARLKKLSYGLSSDHCDAVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYACLAARIAVSNLHKNTKKSFSETIKIMYYHFNERSGLKAPLIADDVYEIIMKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQGQVLERPQHMLMRVAVGIHKDDIDSAVKTYHMMSQRWFTHASPTLFNAGTPRPQLSSCFLVCMKDDSIEGIYETLKECAIISKSAGGIGVSIHDIRATGSYIRGTNGTSNGIVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADMFEFLDLRKNHGKEEHRARDLFYALWVPDLFMERVQSNGQWSLFCPSEAPGLTDCWGEKFEELYLQYEREGKAMKVVQAQSLWFEILKSQIETGTPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYSSPTETAVCNLASIALPRYVREKGVPMESHPSKLVGSTCSGNRYFDFDKLAEITALVTTNLNKVIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKEIFETIYYHALKTSCGLAAKEGPYETYSGSPISKGILQPDMWGVAPSNRWDWDALREMISKNGVRNSLLVAPMPTASTSQILGNNECFEPYTSNIYSRRVLSGEFVVVNKHLLHDLTEMGLWSPTLKNKIIYEDGSVQKIPEIPADLKNIYKTVWEIKQRTLVDMAADRGCYIDQSQSLNIHMDQPNFGKLTSLHFYAWSKGLKTGMYYLRSRAAADAIKFTVDTSALREKSNVEDDDNTKMAQMVCSLTNRDECLACGS*

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