Glyma06g15260 - SoyBase

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Report for Sequence Feature Glyma06g15260

Feature Type:	gene_model
Chromosome:	Gm06
Start:	12006001
stop:	12009597
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15260

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39410	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 13 \| chr4:18332937-18334789 REVERSE LENGTH=304	SoyBase	E_val: 6.00E-63	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_I1KBD0	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KBD0_SOYBN	SoyBase	E_val: 1.00E-177	ISS
UniRef100_Q2PJS2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY40 n=1 Tax=Glycine max RepID=Q2PJS2_SOYBN	SoyBase	E_val: 5.00E-115	ISS

Proteins Associated with Glyma06g15260

Locus	Gene Symbol	Protein Name
	WRKY99	WRKY Transcription Factor

Expression Patterns of Glyma06g15260

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15260

Paralog	Evidence	Comments
Glyma04g39621	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15260 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g147500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15260

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g15260

Limit To All Plant Sequences

>Glyma06g15260.2   sequence type=transcript   gene model=Glyma06g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGAGATGTGAAAGAATTTTATTAGAAATTTGACATATATTCTTTAAAGCAAGTAAAGAGAGCCAAAAAGAAAAGGGAAAGTTGGTTGAGCTACGACGTTATAAGATATATAGTGTAACCACGTCGCCAAAGTTCGAGAGAAACCCTCTTTCGTTTCGGTAAAGGGAACTAATCGCTTTTGTCTTGTGTTATATATGTTGCTGTTGTTACAATGATCTTCTCTAAGTTTAGGTAATCAAGAAAGAAACGAGATTGCTAGCTAGAGATTGTGTTGGATCTCAAAGGGTAGAGAAGAGAAGAGAAACGAGAAAGAAAGAAAGAAAAGATAATCAAGAAATGATGTCAACAACTAATGTTAACCATAGCTTGTTTGAAGAACAAGATCAGATCCCTACGCAGATGGGGCTGTTCAATATTATTCCTTTCCCACCAAACCAAACCTACCCACCTTTGGGTTGTCAAACAGTAACTTTGAAATCCATCAGTGCAATAGCTCCTTCACTTTCATCTGCTGCAAATTTTTCTGAAACCCTACTTTCAACCGCTGTTAATCAAAGACCACGAGAAGAAGATCTCACTTCAAGTTTGGTAGGAGGAGGTGGAGGCCAACTCCTTTCCTTGAGCAGATCGAGAGTGAATTCATGGGCATGGGAGGAAGTAAGCGATTGCTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATGAAGGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCACCCAAGAAATTATATACTTCTTTTTCGCTGGAAGGACTGGCCAGGTAGACCCAAAAGGCTTGGTTGGAGACAGGTTAACGAAGCTACTACCGTTGCACCCAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGCTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACACGTGCACTCGCCATCAAATGAACTTGAAGACTCGCAAACCCCTTCTGAACTTAGTAATTTCCTGTGGTAGTAGCATACACCATCATAATGTTTACATATATGTATATTTTAATATATCGTAGAGACTAGAGATGAAGACCGAATAAGTAGAGAGGAATGAGTAAAAATTGACAGTGTATCTAGGAAATGGTGCATGCATGCTTTGGTTCATTGTCAATTTTCACTCGTTTCCATCTAATATTCCTCCCATTTTCACCCTTTCCAAAAGCACAACATATATATGTGGTTGTGTTTTTTAGTTTTCAAGCGTCTAGATCAACATTTCAGAAGTGTACTTAACAGTCTTGGTGGTGTTTCATAAAAACTCAACAGCAAATTAACCAGTAATATTTGTAAGTTGCAAACTGGGTTCAAGCTTTTA

Coding sequences of Glyma06g15260

Limit To All Plant Sequences

>Glyma06g15260.1   sequence type=CDS   gene model=Glyma06g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCAACAACTAATGTTAACCATAGCTTGTTTGAAGAACAAGATCAGATCCCTACGCAGATGGGGCTGTTCAATATTATTCCTTTCCCACCAAACCAAACCTACCCACCTTTGGGTTGTCAAACAGTAACTTTGAAATCCATCAGTGCAATAGCTCCTTCACTTTCATCTGCTGCAAATTTTTCTGAAACCCTACTTTCAACCGCTGTTAATCAAAGACCACGAGAAGAAGATCTCACTTCAAGTTTGGTAGGAGGAGGTGGAGGCCAACTCCTTTCCTTGAGCAGATCGAGAGTGAATTCATGGGCATGGGAGGAAGTAAGCGATTGCTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATGAAGGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCACCCAAGAAGCTACTACCGTTGCACCCAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGCTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACACGTGCACTCGCCATCAAATGAACTTGAAGACTCGCAAACCCCTTCTGAACTTAGTAATTTCCTGTGGTAG

>Glyma06g15260.2   sequence type=CDS   gene model=Glyma06g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGTCAACAACTAATGTTAACCATAGCTTGTTTGAAGAACAAGATCAGATCCCTACGCAGATGGGGCTGTTCAATATTATTCCTTTCCCACCAAACCAAACCTACCCACCTTTGGGTTGTCAAACAGTAACTTTGAAATCCATCAGTGCAATAGCTCCTTCACTTTCATCTGCTGCAAATTTTTCTGAAACCCTACTTTCAACCGCTGTTAATCAAAGACCACGAGAAGAAGATCTCACTTCAAGTTTGGTAGGAGGAGGTGGAGGCCAACTCCTTTCCTTGAGCAGATCGAGAGTGAATTCATGGGCATGGGAGGAAGTAAGCGATTGCTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCATCATCTAGGGGTTTCTGCCATGAAGATGAAGAAAATGAAGGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTAGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCACCCAAGAAATTATATACTTCTTTTTCGCTGGAAGGACTGGCCAGGTAGACCCAAAAGGCTTGGTTGGAGACAGGTTAACGAAGCTACTACCGTTGCACCCAAGATAACTGTCGAGTAA

Predicted protein sequences of Glyma06g15260

Limit To All Plant Sequences

>Glyma06g15260.1   sequence type=predicted peptide   gene model=Glyma06g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSTTNVNHSLFEEQDQIPTQMGLFNIIPFPPNQTYPPLGCQTVTLKSISAIAPSLSSAANFSETLLSTAVNQRPREEDLTSSLVGGGGGQLLSLSRSRVNSWAWEEVSDCLMGKRIGGDDNHHHHLGVSAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELEDSQTPSELSNFLW*

>Glyma06g15260.2   sequence type=predicted peptide   gene model=Glyma06g15260   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMSTTNVNHSLFEEQDQIPTQMGLFNIIPFPPNQTYPPLGCQTVTLKSISAIAPSLSSAANFSETLLSTAVNQRPREEDLTSSLVGGGGGQLLSLSRSRVNSWAWEEVSDCLMGKRIGGDDNHHHHLGVSAMKMKKMKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRNYILLFRWKDWPGRPKRLGWRQVNEATTVAPKITVE*

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