Glyma06g15240 - SoyBase

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Report for Sequence Feature Glyma06g15240

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11978602
stop:	11981118
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64790	AT	Annotation by Michelle Graham. TAIR10: O-Glycosyl hydrolases family 17 protein \| chr5:25902713-25904559 FORWARD LENGTH=485	SoyBase	E_val: 0	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004553	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PTHR16631	Panther	GLUCAN 1,3-BETA-GLUCOSIDASE-RELATED	JGI		ISS
PF00332	PFAM	Glycosyl hydrolases family 17	JGI		ISS
PF07983	PFAM	X8 domain	JGI		ISS
UniRef100_G7JAB8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucan endo-1,3-beta-glucosidase n=1 Tax=Medicago truncatula RepID=G7JAB8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1KBC7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g15240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g15240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g147300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g15240

Limit To All Plant Sequences

>Glyma06g15240.2   sequence type=CDS   gene model=Glyma06g15240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCCAACCGAGTTCTTCATGTGGGGGCTATGTTTGATATTGGTCTTTGCTCATTACCAAGGTGCCCAAGGGGAAGAGTCTATACCAGGTCTTGGTATCAATTGGGGTGCATTAGCATCCCACACTTTGAATCCTAACGTAGTGGTGAATATGTTGAAGGACAACGGGATCAAGAAGGTGAAACTTTTTGATGCAGATTCTTGGACCCTGAGTGCTTTGTCTGGTACAGACATTGAAGTCATGGTAGGAATTCCTAATGATCAATTGAGTAAATTTGCTGGAAGTAGCGGAGATGCTGAAGCTTGGGTTAGAGAAAATCTCACCAAACATATTCATAATCATCATGGGAGCGTCAACATCAGACACGTATCTGTTGGAAATGAGCCATTCATGAAAGGTTACAAGGGTGCATATGTGAAGACCACATTCCCAGCAATGCAAAATATTCAAAAGGCCATCGACAAGGCTGGTCTTGGAGACACAGTGAAGGTGACAACGGCTTTGAATGCCGATGTTTACGAGTCTGCTTCAGACAAGCCATCAGATGGAGATTTTCGGAGTGACATTTACGATGCCATAAAACAAATACTAAGTTTGCTTCACGAAAGGAACTCACCATTTCTTGTCAACATATACCCTTTCCTCAGTCTCTACCAGAACGACAATTTTCCTGAAGAATTTGCATTCTTTGATGGTCAAGGCAGAACAATTCAAGACAAAGATGCACAATACAGCAATGTCTATGATGCAAATTTGGACACCCTTGTTTGGTCATTGAGAAAAGCTGGCTACCCTGACTTGAGAATTGTGGTTGGTGAAATTGGATGGCCAACTGATGGCAACAAAAATGCTAATAACTACAATGCAAAAAGGTTCTACCAAGGACTACTCAAGAAAATGGTACACAAGAAAGGAACTCCTCTTCGCCCCGGAGCCATGGAGATGTATCTGTTTTCTCTTACTGATGAGAACTTGAAGAGCATTGAGCCTGGCAACTTTGAGCGTCATTGGGGAATTTTTGGCTACGACGGAAGGCCTAAGTTTCCCATTGATTTTTCTGGTCAGGGACAGGACAAATGGCCAGTGGCAGCCAAAGGTGTTGTTTACCAAGAACGTCAATGGTGTGTCCTAAGTAGTGATGTTAAGAACTTGAGTTTGGTGCCAAGTGCATTGGACTATGCTTGTGCTGGTGCTGATTGCACAAGCTTAGGATTTGGTTGTTCTTGTGATAAGTTAGACCTTGCTGGCAATGCTTCATTTGCTTTCAACCAATATTTTCAAACAAGGGACCAAAGTGTTGAGGCGTGTGATTTCAATGGAATGGGAACTATTGTGAAACAGGATCCATCAAAGGGAAGTTGCTTGTTCCCTATAGAAATTGAGAGCAGTGGTGACATGGTTAGAGCAATGCGTGCGATTGGAAGCATTTTGATTGGATTGGCATTGTTTTTCGTAACATTTACGTAG

Predicted protein sequences of Glyma06g15240

Limit To All Plant Sequences

>Glyma06g15240.2   sequence type=predicted peptide   gene model=Glyma06g15240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAPTEFFMWGLCLILVFAHYQGAQGEESIPGLGINWGALASHTLNPNVVVNMLKDNGIKKVKLFDADSWTLSALSGTDIEVMVGIPNDQLSKFAGSSGDAEAWVRENLTKHIHNHHGSVNIRHVSVGNEPFMKGYKGAYVKTTFPAMQNIQKAIDKAGLGDTVKVTTALNADVYESASDKPSDGDFRSDIYDAIKQILSLLHERNSPFLVNIYPFLSLYQNDNFPEEFAFFDGQGRTIQDKDAQYSNVYDANLDTLVWSLRKAGYPDLRIVVGEIGWPTDGNKNANNYNAKRFYQGLLKKMVHKKGTPLRPGAMEMYLFSLTDENLKSIEPGNFERHWGIFGYDGRPKFPIDFSGQGQDKWPVAAKGVVYQERQWCVLSSDVKNLSLVPSALDYACAGADCTSLGFGCSCDKLDLAGNASFAFNQYFQTRDQSVEACDFNGMGTIVKQDPSKGSCLFPIEIESSGDMVRAMRAIGSILIGLALFFVTFT*

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