Glyma06g15150 - SoyBase

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Report for Sequence Feature Glyma06g15150

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11924253
stop:	11925690
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G21950	AT	Annotation by Michelle Graham. TAIR10: SKP1 interacting partner 6 \| chr2:9353526-9354644 REVERSE LENGTH=372	SoyBase	E_val: 2.00E-142	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004842	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity	SoyBase	N/A	ISS
PTHR13690	Panther	KELCH-RELATED	JGI		ISS
PTHR13690:SF90	Panther	KELCH-RELATED	JGI		ISS
PF00646	PFAM	F-box domain	JGI		ISS
PF01344	PFAM	Kelch motif	JGI		ISS
UniRef100_G7JAA2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F-box/kelch-repeat protein SKIP6 n=1 Tax=Medicago truncatula RepID=G7JAA2_MEDTR	SoyBase	E_val: 3.00E-168	ISS
UniRef100_I1KBB7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBB7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g15150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15150

Paralog	Evidence	Comments
Glyma04g39720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g146500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g15150

Limit To All Plant Sequences

>Glyma06g15150.1   sequence type=CDS   gene model=Glyma06g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTGGTCCTCTGGTTCAGAATCAGAAGAGTCAGCGAGCCCCAACAACCTAATCCCGTCCCTCCCAGACGACGTCGCATTGAACTGCCTAGGACGCATCCCTCGGTCCCAGCACCCAACCCTCTCCCTGGTCTCCAAACCCATCCGCACCCTCCTCTCTTCCCCAATCCTCTTCACCACGCGAACCCTCCTCCAATGCACCCAACCCCTCCTCTACCTCACTCTCCGCTCACGCCACTCCTCTCTCCTCCAATTCTTCACGCTCCACCGCACAAACCCTAATAACCCCCTCCTCGCTCCCCTTCCCCCGATCCCCTCCCCCGCCGTCGGCTCCGCCTACGCCGTCCTCGGCCCCACCATCTACGTCCTCGGCGGCTCCATCCACGACGTCCCCTCCCCCAACGTCTGGCTCCTCGACTGCCGCTTCAACCGCTGGCTCCGCGGTCCCTCCATGCGCGTCGGCCGCGAATTCGCCGCCGCGGGAGTCCTCCACGGCAAGATCTACGTCCTCGGCGGCTGCGTCGCTGACACCTGGTCCCGCTCCGCCAATTGGGCGGAGGTCCTCGACCCCGCCACTGGCCAATGGGAGAGGGTCGCCAGTCCGACGGAGGTCCGTGAGAAGTGGATGCACGCCAGCGCCGTCGTCGGGGAGCGGATCTACGCGATGGCAGATCGCGGTGGCATCGCCTACGAGCCTAGCAGCGGCGCGTGGGAGAGCGTGGGGGTAGAATTGGACCACGGGTGGAGGGGGAGGGCGTGCGTGGTGGAAGGGATTTTGTACTGCTACGATTATTTGGGGAAAATCAAAGGGTTCGATGTGGGGCGCGGGGTGTGGGAGGAGTTGAAGGGGTTGGAGAAGGGTTTGCCCAGGTTTCTGTGTGGGGCTACCATGGCTGATTTGGGTGGGAAATTGTGTGTGGTTTGGGAGTGCCAGGGGAATGAGAATGAAATGGAGATTTGGTGCGCTGAGATTGGAGTGAAGAAGAATTCGGATGGGGAATTGTGGGGTCAACTTGTTTGGTTCGGGAAGGTTCTTTCTGTTCCCAAAGGCTCTTCCATTGTCAACTGTTCTTCTGTTTCCTTGTGA

Predicted protein sequences of Glyma06g15150

Limit To All Plant Sequences

>Glyma06g15150.1   sequence type=predicted peptide   gene model=Glyma06g15150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSWSSGSESEESASPNNLIPSLPDDVALNCLGRIPRSQHPTLSLVSKPIRTLLSSPILFTTRTLLQCTQPLLYLTLRSRHSSLLQFFTLHRTNPNNPLLAPLPPIPSPAVGSAYAVLGPTIYVLGGSIHDVPSPNVWLLDCRFNRWLRGPSMRVGREFAAAGVLHGKIYVLGGCVADTWSRSANWAEVLDPATGQWERVASPTEVREKWMHASAVVGERIYAMADRGGIAYEPSSGAWESVGVELDHGWRGRACVVEGILYCYDYLGKIKGFDVGRGVWEELKGLEKGLPRFLCGATMADLGGKLCVVWECQGNENEMEIWCAEIGVKKNSDGELWGQLVWFGKVLSVPKGSSIVNCSSVSL*

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