Glyma06g15140 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g15140

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11916437
stop:	11923076
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g15140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G64860	AT	Annotation by Michelle Graham. TAIR10: disproportionating enzyme \| chr5:25925373-25928788 REVERSE LENGTH=576	SoyBase	E_val: 0	ISS
GO:0000025	GO-bp	Annotation by Michelle Graham. GO Biological Process: maltose catabolic process	SoyBase	N/A	ISS
GO:0005975	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process	SoyBase	N/A	ISS
GO:0005983	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch catabolic process	SoyBase	N/A	ISS
GO:0006006	GO-bp	Annotation by Michelle Graham. GO Biological Process: glucose metabolic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004134	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 4-alpha-glucanotransferase activity	SoyBase	N/A	ISS
GO:0043169	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation binding	SoyBase	N/A	ISS
PF02446	PFAM	4-alpha-glucanotransferase	JGI		ISS
UniRef100_G7JAA1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 4-alpha-glucanotransferase n=1 Tax=Medicago truncatula RepID=G7JAA1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KBB6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBB6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g15140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g15140

Paralog	Evidence	Comments
Glyma04g39730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g15140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g146400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g15140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g15140

Limit To All Plant Sequences

>Glyma06g15140.1   sequence type=CDS   gene model=Glyma06g15140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTGCTGGCATTGAACATCTCAGTGTGTTGTTTCCAACAGCAGCGTTCCCCCACTCTCTTCAAACCCACCATTACCAAACAAACCCTCTCCCTCCCCACCGCTTCCGCTTTCTCTTCCTCTTCCTTAACTCAACTCAGCGTGGGCCAATATTTACCCGCCAACTACGGCGATTGGGTTCCCAACCCCGACCCGGAGCTTCGCAGAAGATGCGGCATTCTGCTCCATCCGACGTCGTTTCGCGGCCCCTACGGAATTGGCGATCTTGGCGACGAGGCCTTCCGTTTCATCGACTGGCTCCACCACTCGGGTTGCTCCGTTTGGCAGGTTCTTCCCCTCGTGCCACCTGGCAGAAAGGCCAACGAAGAAGGATCCCCTTACTCTGGCCAGGATGCGAATTGTGGCAACACGCTCTTGATCTCTCTTCAAGGCCTCGTCGAGGATGGGTTGTTGGAAAAACACGAGCTTCCTCAACCAATTGATGCAGAGCGCGTGAATTTTTCACTTGTTGCTGATGTTAAGGATCCTTTGATAACTAAGGCTGCAGAGAGGCTCATTTCAAGTGAAGGGGAACTCAAAACACAGCTTGAGAATTTTCGTCGGGACCCTGACATATCAAGCTGGCTTGAAGATGCAGCCTATTTTGCTGCTATTGACGACAGTTTAAACACAATCAGCTGGTACAATTGGCCTGAACCTTTAAGAAATCGCCATCTTGTAGCTCTAGAAGATATTTACCAACAAAAGCGAGATTTTATAAATGTATTTATTGCCCAACAGTTCTTGTTTCAAAGGCAGTGGCAGAAAGTTCACAGCTATGCACAGAGTAAGGGAATCAGCATAATGGGAGACATGCCAATATATGTTGGTTATCATAGCGCAGATGTTTGGGCAAATAAGAAACAGTTTTTACTGAACAGGAAGGGCTTTCCTCTTTTAGTTAGTGGTGTTCCTCCTGACGCATTCAGTGAAACCGGCCAGCTCTGGGGCAGCCCCCTGTATGATTGGAAAGCCATGGAGAAAGATGGATACTCGTGGTGGGTACGTCGCATACGACGTGCACAAAATTTATTTGATGAATTTAGGATTGACCACTTTAGAGGATTTGCAGGATATTGGGCTGTTCCCTCTGAAGCAAAAGTAGCTATGCTTGGAAAGTGGAAGGTAGGACCTGGAATATCCTTATTTGATACCATTTTCAGAGCTGTTGGAAGGATTAATATTATAGCAGAAGACTTGGGAGTTATCACTGAGGATGTAGTCCAACTAAGAAGATCCATTGGAGCACCTGGAATGGCTGTTCTCCAATTTGGGTTTGGAGGTGATGCTAATAACCCTCATTTGCCTCATAATCATGAGTGCAATCAAGTTGTCTATACAGGGACTCATGACAATGACACAATTGGAGGTTGGTGGGAAGTTTTGAACCAAGAAGAGAAATCCAATGTACTACGTTATCTTTCATTAAATGAGGGAGATGACATTCCATGGGCGCTAATCCAGAGAGTATTGGCTTCTGTTGCTCAAACAGCAATAATACCTATGCAAGATGTTCTTGGATTGGGTAATTCTGCCAGGATGAATATTCCCGCAACTCAGTTTGGAAACTGGGGTTGGAGAATTGCAAGTTCGGTGAGCTTTGATGGCTTGGAGAGAGAGGCAGACAGACTCAGAGAAATGCTTTCAATGTATGGCCGACTTTGA

Predicted protein sequences of Glyma06g15140

Limit To All Plant Sequences

>Glyma06g15140.1   sequence type=predicted peptide   gene model=Glyma06g15140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLALNISVCCFQQQRSPTLFKPTITKQTLSLPTASAFSSSSLTQLSVGQYLPANYGDWVPNPDPELRRRCGILLHPTSFRGPYGIGDLGDEAFRFIDWLHHSGCSVWQVLPLVPPGRKANEEGSPYSGQDANCGNTLLISLQGLVEDGLLEKHELPQPIDAERVNFSLVADVKDPLITKAAERLISSEGELKTQLENFRRDPDISSWLEDAAYFAAIDDSLNTISWYNWPEPLRNRHLVALEDIYQQKRDFINVFIAQQFLFQRQWQKVHSYAQSKGISIMGDMPIYVGYHSADVWANKKQFLLNRKGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMEKDGYSWWVRRIRRAQNLFDEFRIDHFRGFAGYWAVPSEAKVAMLGKWKVGPGISLFDTIFRAVGRINIIAEDLGVITEDVVQLRRSIGAPGMAVLQFGFGGDANNPHLPHNHECNQVVYTGTHDNDTIGGWWEVLNQEEKSNVLRYLSLNEGDDIPWALIQRVLASVAQTAIIPMQDVLGLGNSARMNIPATQFGNWGWRIASSVSFDGLEREADRLREMLSMYGRL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain