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Report for Sequence Feature Glyma06g15070

Feature Type:gene_model
Chromosome:Gm06
Start:11855535
stop:11869605
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G64940AT Annotation by Michelle Graham. TAIR10: ABC2 homolog 13 | chr5:25949116-25953326 FORWARD LENGTH=761 SoyBaseE_val: 0ISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0005215GO-mf Annotation by Michelle Graham. GO Molecular Function: transporter activity SoyBaseN/AISS
GO:0016772GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups SoyBaseN/AISS
KOG1235 KOG Predicted unusual protein kinase JGI ISS
PTHR10566Panther CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED JGI ISS
PTHR10566:SF10Panther ABC1 - RELATED JGI ISS
PF03109PFAM ABC1 family JGI ISS
UniRef100_G7LB96UniRef Annotation by Michelle Graham. Most informative UniRef hit: ABC transporter-like protein n=1 Tax=Medicago truncatula RepID=G7LB96_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1KBA9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBA9_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma04g39801 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g145700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g15070.2   sequence type=transcript   gene model=Glyma06g15070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCAAGAGTGGGTAACGGAAGCGCAATGATGGAGGGCCTGGAGTGGACATGTAAGATAATAGATACTTTGATCCATGAAAATAAAAAAGAATATTTTTATGGCTCATCTTGGCTAAAGCCACGTGTTCTGTTCATCTCCACCCCTTTCCCTCCTTTCTATCACGCTCACACTGTGATCCTTAGTCAATCTCTCTCACTCTTCATGGCTACGTCTTCTCCTCTCCCGTTACCCGAACTCCACTTCCTCTCTCCGCAAACCACCCCCAAACGCCGTATCTCCTTCTCCAAACTCCCCTCCTCACCTTACTCCGTTTCCCGCCACGTCACCTCCAACGTCTCTCTCCGCACCTCGCGAATCCGCGCAACTAGAGAAGAATCCGCGTTGGCCGAGCGACTCAACGACGTCGAATGGACCGGAAACGGCGCCGCCGCCGCTGCTGCTGACGGAAATGGCGCCTCCGTTGGTGGATACGTTAACGGCGCTACTAACGGAAGCTTGGTGAAGTACGGCTACGAAAACGGAAACGGCGTTTCTGCGGAGGTGTTGGAAGTTGAAGCCTCTAATAAGCTGAGCGAGGATGGGAGGAAGAAGAGGTTGGAGGAGATTGGGAAAGAAGACGCCTGGTTTAAACAAAGTGGGAACGAACAAGTTGAGGTGGCGGTTGCGCCTGGGGGTCGTTGGAACAGGTTCAAGACTTACTCCACAATACAAAGAACCTTTGAGATTTGGGGATTTTTTGCCACGTTTATCTTTAAGGCTTGGCTGAACAACCAGAAGTTCTCTTACAAAGGAGGAATGACTGAGGAAAAACAAACCTTAAGGCGAAAGGTTCTTGCCAAGTGGCTGAAGGAAAACATTCTTAGATTAGGTCCAACATTCATCAAAATTGGCCAGCAGTTCTCCACTAGGGTGGACATTCTTCCTCAAGAATATGTTGACCAGTTGTCCGAACTTCAGGATCAAGTTCCTCCATTTCCCTCAGAGACCTCTGTAGCTATTGTTGAAGAAGAGCTTGGAGCTCCTTTAGGTGATATCTTTGATCAGTTTGACTATGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTTCATCGTGCGAGATTAAATGGACAGGAGGTTGTTATTAAAGTACAAAGGCCTGGTCTCAAGGATCTTTTTGATATTGATCTTAAAAACCTGAGGGTTATTGCTGAATATCTTCAAAAAATCGATCCAAAATCAGATGGCGCAAAGAGGGATTGGGTTGCTATTTATGATGAATGTGCCTCTGTCTTATATCAGGAGATTGATTACACCAAGGAGGCTGCTAATGCAGAATTGTTTGCAAGTAACTTTAAGAACATGGATTATGTGAAAGTTCCTACAATCTACTGGGATTATACCACACCACAGATTCTGACAATGGAGTATGTTCCAGGGATTAAAATAAACAAAATACAAGCTTTAGATCAACTGGGTGTTGACCGCAAAAGGTTAGGGAGATATGCGGTTGAGTCATACTTGGAACAAATTTTATCACATGGTTTCTTCCATGCTGACCCTCATCCTGGAAATATTGCAGTTGATGATGTCAATGGTGGAAGATTGATCTTCTATGATTTTGGAATGATGGGGAGTATCAGTCCAAACATTCGAGAAGGTTTGCTTGAAACATTTTATGGAGTTTATGAGAAAGATCCAGACAAGGTTCTACAAGCAATGATTCAAATGGGAGTTCTTGTCCCTACTGGAGATATGACTGCTGTTAGAAGAACAGCACAATTCTTCCTTAACAGTTTTGAAGAGCGCCTGGCTGCACAAAGGCAAGAGAGAGAGGAAGCAACAACTGAACTTGGATTCAAAAAACCATTAAGCAAGGAGGAAAAAATAAAGAAGAAAAAGCAACGTCTGGCTGCTATTGGTGAAGATTTATTATCTATTGCAGCAGACCAGCCCTTCCGATTTCCTGCTACATTCACATTTGTTGTTAGAGCCTTCTCAGTGTTGGATGGCATTGGAAAGGGGCTTGACCCACGTTTTGACATCACTGAGATTGCCAAACCTTATGCCCTGGAGTTGCTCAGGTTTCGTGAAGCTGGGGTTGAAGTTGTCCTAAAGGACTTCAGGAAGAGATGGGATAGACAATCTCAAGCATTTTACAACTTATTCAGACAGGCTGATAGGGTTGACAAGCTTGCTGACATTATCCAAAGACTGGAGCAAGGTGATCTAAAGCTGCGAGTTCGAACTTTGGAATCTGAGAGGGCATTCCAGCGTGTTGCTGCTGTCCAGAAGACTATAGGGAGTGCAGTAGCTGCTGGGAGCCTAATCAATCTTGCAACAGTTTTGTATCTCAATTCAATTCGGGTGCCTGCCATTGCAGCATATATCTTCTGTGCACTCTTTGGTTTTCAAGTGCTCTTGGGCATTGTCAAGGTCAAGAAGCTAGATGAACGGGAACGATTGATAACAGGGACTGCATAAGCAGCTACATGATTTAGGATTAGGACCGAAAAATAGCTCATGTTAAGGTCATGGTTACAAGTCAACCTTCAGAGCATGAAAAGGATTAAATGACCTGGGGAGCTGAAAGAAAGCATTACCCAACATTTCGGAAGACTTCAGCAAGTATAAAAATTTCAATTAGCAAATGATGGGGGCTTTCTCCATTCACCTGTTTCAGTTAATAAAAAAATTGTGCTCTACAATAGCCAATTGGCTTTAGAGCCACATTTTTGTCATTACACCCCACCTCCCTCCCAAAAAAATTATATGTTATTGCCCCATAGTAACATGTATAGGTATGATGTAGAGTTTGGATATATTCACAATTCACTACTACATTCCACGCCCGAACTTAACCGAAATCTGTCAAAATTCAGCTACTATTTTTCTATGTAGCATGACTCTTATTGTAATTACTATTACAGTATTATACAGTATGATGCAGCTTCCAACAAAAAATTGGAGAGGAAGCTTTGCCCGAAATTGACTTCCATAGATTTGTTCAATGAAAAAAAAATGGTTGTATGTGTCATCGATGTGCGTGTTGGATTTACATTGCAGAAGTTTTTCTAGATGGAATTGCAAATA

>Glyma06g15070.1   sequence type=CDS   gene model=Glyma06g15070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGGGCCTGGAGTGGACATGTAAGATAATAGATACTTTGATCCATGAAAATAAAAAAGAATATTTTTATGGCTCATCTTGGCTAAAGCCACGTGTTCTGTTCATCTCCACCCCTTTCCCTCCTTTCTATCACGCTCACACTGTGATCCTTAGTCAATCTCTCTCACTCTTCATGGCTACGTCTTCTCCTCTCCCGTTACCCGAACTCCACTTCCTCTCTCCGCAAACCACCCCCAAACGCCGTATCTCCTTCTCCAAACTCCCCTCCTCACCTTACTCCGTTTCCCGCCACGTCACCTCCAACGTCTCTCTCCGCACCTCGCGAATCCGCGCAACTAGAGAAGAATCCGCGTTGGCCGAGCGACTCAACGACGTCGAATGGACCGGAAACGGCGCCGCCGCCGCTGCTGCTGACGGAAATGGCGCCTCCGTTGGTGGATACGTTAACGGCGCTACTAACGGAAGCTTGGTGAAGTACGGCTACGAAAACGGAAACGGCGTTTCTGCGGAGGTGTTGGAAGTTGAAGCCTCTAATAAGCTGAGCGAGGATGGGAGGAAGAAGAGGTTGGAGGAGATTGGGAAAGAAGACGCCTGGTTTAAACAAAGTGGGAACGAACAAGTTGAGGTGGCGGTTGCGCCTGGGGGTCGTTGGAACAGGTTCAAGACTTACTCCACAATACAAAGAACCTTTGAGATTTGGGGATTTTTTGCCACGTTTATCTTTAAGGCTTGGCTGAACAACCAGAAGTTCTCTTACAAAGGAGGAATGACTGAGGAAAAACAAACCTTAAGGCGAAAGGTTCTTGCCAAGTGGCTGAAGGAAAACATTCTTAGATTAGGTCCAACATTCATCAAAATTGGCCAGCAGTTCTCCACTAGGGTGGACATTCTTCCTCAAGAATATGTTGACCAGTTGTCCGAACTTCAGGATCAAGTTCCTCCATTTCCCTCAGAGACCTCTGTAGCTATTGTTGAAGAAGAGCTTGGAGCTCCTTTAGGTGATATCTTTGATCAGTTTGACTATGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTTCATCGTGCGAGATTAAATGGACAGGAGGTTGTTATTAAAGTACAAAGGCCTGGTCTCAAGGATCTTTTTGATATTGATCTTAAAAACCTGAGGGTTATTGCTGAATATCTTCAAAAAATCGATCCAAAATCAGATGGCGCAAAGAGGGATTGGGTTGCTATTTATGATGAATGTGCCTCTGTCTTATATCAGGAGATTGATTACACCAAGGAGGCTGCTAATGCAGAATTGTTTGCAAGTAACTTTAAGAACATGGATTATGTGAAAGTTCCTACAATCTACTGGGATTATACCACACCACAGATTCTGACAATGGAGTATGTTCCAGGGATTAAAATAAACAAAATACAAGCTTTAGATCAACTGGGTGTTGACCGCAAAAGGTTAGGGAGATATGCGGTTGAGTCATACTTGGAACAAATTTTATCACATGGTTTCTTCCATGCTGACCCTCATCCTGGAAATATTGCAGTTGATGATGTCAATGGTGGAAGATTGATCTTCTATGATTTTGGAATGATGGGGAGTATCAGTCCAAACATTCGAGAAGGTTTGCTTGAAACATTTTATGGAGTTTATGAGAAAGATCCAGACAAGGTTCTACAAGCAATGATTCAAATGGGAGTTCTTGTCCCTACTGGAGATATGACTGCTGTTAGAAGAACAGCACAATTCTTCCTTAACAGTTTTGAAGAGCGCCTGGCTGCACAAAGGCAAGAGAGAGAGGAAGCAACAACTGAACTTGGATTCAAAAAACCATTAAGCAAGGAGGAAAAAATAAAGAAGAAAAAGCAACGTCTGGCTGCTATTGGTGAAGATTTATTATCTATTGCAGCAGACCAGCCCTTCCGATTTCCTGCTACATTCACATTTGTTGTTAGAGCCTTCTCAGTGTTGGATGGCATTGGAAAGGGGCTTGACCCACGTTTTGACATCACTGAGATTGCCAAACCTTATGCCCTGGAGTTGCTCAGGTTTCGTGAAGCTGGGGTTGAAGTTGTCCTAAAGGACTTCAGGAAGAGATGGGATAGACAATCTCAAGCATTTTACAACTTATTCAGACAGGCTGATAGGGTTGACAAGCTTGCTGACATTATCCAAAGACTGGAGCAAGGTGATCTAAAGCTGCGAGTTCGAACTTTGGAATCTGAGAGGGCATTCCAGCGTGTTGCTGCTGTCCAGAAGACTATAGGGAGTGCAGTAGCTGCTGGGAGCCTAATCAATCTTGCAACAGTTTTGTATCTCAATTCAATTCGGGTGCCTGCCATTGCAGCATATATCTTCTGTGCACTCTTTGGTTTTCAAGTGCTCTTGGGCATTGTCAAGGTCAAGAAGCTAGATGAACGGGAACGATTGATAACAGGGACTGCATAA

>Glyma06g15070.2   sequence type=CDS   gene model=Glyma06g15070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGGAGGGCCTGGAGTGGACATGTAAGATAATAGATACTTTGATCCATGAAAATAAAAAAGAATATTTTTATGGCTCATCTTGGCTAAAGCCACGTGTTCTGTTCATCTCCACCCCTTTCCCTCCTTTCTATCACGCTCACACTGTGATCCTTAGTCAATCTCTCTCACTCTTCATGGCTACGTCTTCTCCTCTCCCGTTACCCGAACTCCACTTCCTCTCTCCGCAAACCACCCCCAAACGCCGTATCTCCTTCTCCAAACTCCCCTCCTCACCTTACTCCGTTTCCCGCCACGTCACCTCCAACGTCTCTCTCCGCACCTCGCGAATCCGCGCAACTAGAGAAGAATCCGCGTTGGCCGAGCGACTCAACGACGTCGAATGGACCGGAAACGGCGCCGCCGCCGCTGCTGCTGACGGAAATGGCGCCTCCGTTGGTGGATACGTTAACGGCGCTACTAACGGAAGCTTGGTGAAGTACGGCTACGAAAACGGAAACGGCGTTTCTGCGGAGGTGTTGGAAGTTGAAGCCTCTAATAAGCTGAGCGAGGATGGGAGGAAGAAGAGGTTGGAGGAGATTGGGAAAGAAGACGCCTGGTTTAAACAAAGTGGGAACGAACAAGTTGAGGTGGCGGTTGCGCCTGGGGGTCGTTGGAACAGGTTCAAGACTTACTCCACAATACAAAGAACCTTTGAGATTTGGGGATTTTTTGCCACGTTTATCTTTAAGGCTTGGCTGAACAACCAGAAGTTCTCTTACAAAGGAGGAATGACTGAGGAAAAACAAACCTTAAGGCGAAAGGTTCTTGCCAAGTGGCTGAAGGAAAACATTCTTAGATTAGGTCCAACATTCATCAAAATTGGCCAGCAGTTCTCCACTAGGGTGGACATTCTTCCTCAAGAATATGTTGACCAGTTGTCCGAACTTCAGGATCAAGTTCCTCCATTTCCCTCAGAGACCTCTGTAGCTATTGTTGAAGAAGAGCTTGGAGCTCCTTTAGGTGATATCTTTGATCAGTTTGACTATGAACCAATAGCTGCTGCAAGTCTTGGTCAGGTTCATCGTGCGAGATTAAATGGACAGGAGGTTGTTATTAAAGTACAAAGGCCTGGTCTCAAGGATCTTTTTGATATTGATCTTAAAAACCTGAGGGTTATTGCTGAATATCTTCAAAAAATCGATCCAAAATCAGATGGCGCAAAGAGGGATTGGGTTGCTATTTATGATGAATGTGCCTCTGTCTTATATCAGGAGATTGATTACACCAAGGAGGCTGCTAATGCAGAATTGTTTGCAAGTAACTTTAAGAACATGGATTATGTGAAAGTTCCTACAATCTACTGGGATTATACCACACCACAGATTCTGACAATGGAGTATGTTCCAGGGATTAAAATAAACAAAATACAAGCTTTAGATCAACTGGGTGTTGACCGCAAAAGGTTAGGGAGATATGCGGTTGAGTCATACTTGGAACAAATTTTATCACATGGTTTCTTCCATGCTGACCCTCATCCTGGAAATATTGCAGTTGATGATGTCAATGGTGGAAGATTGATCTTCTATGATTTTGGAATGATGGGGAGTATCAGTCCAAACATTCGAGAAGGTTTGCTTGAAACATTTTATGGAGTTTATGAGAAAGATCCAGACAAGGTTCTACAAGCAATGATTCAAATGGGAGTTCTTGTCCCTACTGGAGATATGACTGCTGTTAGAAGAACAGCACAATTCTTCCTTAACAGTTTTGAAGAGCGCCTGGCTGCACAAAGGCAAGAGAGAGAGGAAGCAACAACTGAACTTGGATTCAAAAAACCATTAAGCAAGGAGGAAAAAATAAAGAAGAAAAAGCAACGTCTGGCTGCTATTGGTGAAGATTTATTATCTATTGCAGCAGACCAGCCCTTCCGATTTCCTGCTACATTCACATTTGTTGTTAGAGCCTTCTCAGTGTTGGATGGCATTGGAAAGGGGCTTGACCCACGTTTTGACATCACTGAGATTGCCAAACCTTATGCCCTGGAGTTGCTCAGGTTTCGTGAAGCTGGGGTTGAAGTTGTCCTAAAGGACTTCAGGAAGAGATGGGATAGACAATCTCAAGCATTTTACAACTTATTCAGACAGGCTGATAGGGTTGACAAGCTTGCTGACATTATCCAAAGACTGGAGCAAGGTGATCTAAAGCTGCGAGTTCGAACTTTGGAATCTGAGAGGGCATTCCAGCGTGTTGCTGCTGTCCAGAAGACTATAGGGAGTGCAGTAGCTGCTGGGAGCCTAATCAATCTTGCAACAGTTTTGTATCTCAATTCAATTCGGGTGCCTGCCATTGCAGCATATATCTTCTGTGCACTCTTTGGTTTTCAAGTGCTCTTGGGCATTGTCAAGGTCAAGAAGCTAGATGAACGGGAACGATTGATAACAGGGACTGCATAA

>Glyma06g15070.1   sequence type=predicted peptide   gene model=Glyma06g15070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEGLEWTCKIIDTLIHENKKEYFYGSSWLKPRVLFISTPFPPFYHAHTVILSQSLSLFMATSSPLPLPELHFLSPQTTPKRRISFSKLPSSPYSVSRHVTSNVSLRTSRIRATREESALAERLNDVEWTGNGAAAAAADGNGASVGGYVNGATNGSLVKYGYENGNGVSAEVLEVEASNKLSEDGRKKRLEEIGKEDAWFKQSGNEQVEVAVAPGGRWNRFKTYSTIQRTFEIWGFFATFIFKAWLNNQKFSYKGGMTEEKQTLRRKVLAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPIAAASLGQVHRARLNGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRQEREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNLFRQADRVDKLADIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGSAVAAGSLINLATVLYLNSIRVPAIAAYIFCALFGFQVLLGIVKVKKLDERERLITGTA*

>Glyma06g15070.2   sequence type=predicted peptide   gene model=Glyma06g15070   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMEGLEWTCKIIDTLIHENKKEYFYGSSWLKPRVLFISTPFPPFYHAHTVILSQSLSLFMATSSPLPLPELHFLSPQTTPKRRISFSKLPSSPYSVSRHVTSNVSLRTSRIRATREESALAERLNDVEWTGNGAAAAAADGNGASVGGYVNGATNGSLVKYGYENGNGVSAEVLEVEASNKLSEDGRKKRLEEIGKEDAWFKQSGNEQVEVAVAPGGRWNRFKTYSTIQRTFEIWGFFATFIFKAWLNNQKFSYKGGMTEEKQTLRRKVLAKWLKENILRLGPTFIKIGQQFSTRVDILPQEYVDQLSELQDQVPPFPSETSVAIVEEELGAPLGDIFDQFDYEPIAAASLGQVHRARLNGQEVVIKVQRPGLKDLFDIDLKNLRVIAEYLQKIDPKSDGAKRDWVAIYDECASVLYQEIDYTKEAANAELFASNFKNMDYVKVPTIYWDYTTPQILTMEYVPGIKINKIQALDQLGVDRKRLGRYAVESYLEQILSHGFFHADPHPGNIAVDDVNGGRLIFYDFGMMGSISPNIREGLLETFYGVYEKDPDKVLQAMIQMGVLVPTGDMTAVRRTAQFFLNSFEERLAAQRQEREEATTELGFKKPLSKEEKIKKKKQRLAAIGEDLLSIAADQPFRFPATFTFVVRAFSVLDGIGKGLDPRFDITEIAKPYALELLRFREAGVEVVLKDFRKRWDRQSQAFYNLFRQADRVDKLADIIQRLEQGDLKLRVRTLESERAFQRVAAVQKTIGSAVAAGSLINLATVLYLNSIRVPAIAAYIFCALFGFQVLLGIVKVKKLDERERLITGTA*







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