Report for Sequence Feature Glyma06g14990
Feature Type: gene_model
Chromosome: Gm06
Start: 11754506
stop: 11755772
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g14990
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G79540 AT
Annotation by Michelle Graham. TAIR10: Pentatricopeptide repeat (PPR) superfamily protein | chr1:29920334-29922676 REVERSE LENGTH=780
SoyBase E_val: 3.00E-98 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
PTHR24015 Panther
FAMILY NOT NAMED
JGI ISS
PF01535 PFAM
PPR repeat
JGI ISS
UniRef100_B9SU41 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SU41_RICCO
SoyBase E_val: 2.00E-122 ISS
UniRef100_I1KBA2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KBA2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g14990
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g14990
Paralog Evidence Comments
Glyma04g39910 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g14990 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g144800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g14990
Coding sequences of Glyma06g14990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g14990.2 sequence type=CDS gene model=Glyma06g14990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACCCAGAGGGGCTTAGTTCCTGATGTTGTTTGTTACAATGAAATTATTAAAGTGACCTTCAATGCTCTTATGCATGGACTGTGCAAGGCTGGTAAACTTGAGGAGGCACACCTTTTATTGTACAAGATGGAGATTGGGAGAAGTCCTTCGTTATTCTTCTGGCTTTCTCAGGGTTCTGATCAGGTTTTAGATACTGTTAGTCTCCAGAAAAAGGTGGAGCAAATGTGTGAGGCTGGACAACTTGTGGATGCATACAAGCTTCTCACTCAAGTTGCTTGTAGTGGGGTTATGCCTGACATTGTGACGTACAATGTTCTAATCAACGGCTTTTGCAAGGCTGCTAATATCAATGGTGCTTTAAAGTTTTTCAAGGATATGCAAAACAAAGGGTTCTCACCTAACTCTGTTACTTATGGGACACTTATCGATGGGCTTTTCAGGATTGGCAGAGAAGAGGATGCCTTTAAGATTCGTGAGCATATGCTGAAGCATGGGTGTGAACCTAGCTTTGAAGTTTATAGAGCACTTATGACTTGGTTGTGTAGAAAGAGGAAGGTCTCACAGGCCTTCCGTCTTTATTTGGAATATTTGAAGAACCTTCGTGGCAGGGAAGATGATTCAATCAATGCTTTGGAGCAATGTTTTGTCAGAGGAAAAGTGGAACAGGCATTTCAAGGTTTACTAGAATTGGACTTCAGGTTGAGAGATTTTGCTTTAGCTCCATATACAATTCTACTTATTGGATTTTGCCAGGCAGAAAAAGTAGATGAAGCATCAGTTATATTTTCTGTTCTTGATAAGTTCAATATCAATATCAATCCTACAAGTTGTGTATTTTTAATCCGAGGTCTCAGTGAAAAAGGAAGGCTGGATGATGCAGTAAACATCTTCCTTTACACTCTTGACAGATGTTTCAAGTTGAAGTCAAGTGTTTGTGAGCAGCTCCTCAACCATCTTAATCTTTCCCAAGATAAAAAGGAGTGTGCTATTGATCTTGTTCATAGGATGAAGTCTGCTGGATACCTTTTAAATAGTTTGTTTTCACAGAACACATTGTGTACAGAGCAGGACAAACAATAG
Predicted protein sequences of Glyma06g14990
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g14990.2 sequence type=predicted peptide gene model=Glyma06g14990 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTQRGLVPDVVCYNEIIKVTFNALMHGLCKAGKLEEAHLLLYKMEIGRSPSLFFWLSQGSDQVLDTVSLQKKVEQMCEAGQLVDAYKLLTQVACSGVMPDIVTYNVLINGFCKAANINGALKFFKDMQNKGFSPNSVTYGTLIDGLFRIGREEDAFKIREHMLKHGCEPSFEVYRALMTWLCRKRKVSQAFRLYLEYLKNLRGREDDSINALEQCFVRGKVEQAFQGLLELDFRLRDFALAPYTILLIGFCQAEKVDEASVIFSVLDKFNININPTSCVFLIRGLSEKGRLDDAVNIFLYTLDRCFKLKSSVCEQLLNHLNLSQDKKECAIDLVHRMKSAGYLLNSLFSQNTLCTEQDKQ*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
