Glyma06g14941 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g14941

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11720886
stop:	11726943
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14941

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56320	AT	Annotation by Michelle Graham. TAIR10: PAP/OAS1 substrate-binding domain superfamily \| chr3:20886193-20888624 REVERSE LENGTH=603	SoyBase	E_val: 9.00E-140	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG2277	KOG	S-M checkpoint control protein CID1 and related nucleotidyltransferases	JGI		ISS
PTHR23092	Panther	TOPOISOMERASE-RELATED PROTEIN	JGI		ISS
PTHR23092:SF18	Panther	NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN	JGI		ISS
PF01909	PFAM	Nucleotidyltransferase domain	JGI		ISS
UniRef100_B9SAM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SAM9_RICCO	SoyBase	E_val: 4.00E-165	ISS
UniRef100_UPI0002339792	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339792 related cluster n=1 Tax=unknown RepID=UPI0002339792	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g14941

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g14941 not represented in the dataset	Glyma06g14941 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g14941 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g144300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14941

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g14941

Limit To All Plant Sequences

>Glyma06g14941.1   sequence type=CDS   gene model=Glyma06g14941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAGTAAACGAGAAAATTTGTTATTATCCTCATTACCTAGACAACTGTTATCAATTGATGAAGAATTATGGCGGATGACCGAAGAGAGGATACAAGAGATACTATGGACAATTCAACCAAATGTATTATCTGAGATGAATAGAAAGAATGTTCTTAATTATGTTCAAAAGCTGATTGGAGATTACTATGATACAAAGGTTTTTCCATTCGGTTCTTTTCCACTAAAAACTTATCTTCCTGATGGAGATATCGACTTGACGGTTATTAATCATGAAGACGAAGAGGAGAATTTGGCAAAAGAAATATGCACTATACTTGAATGTGCAAATGACCTTATATACCAAGTAAAAGACATAGAACATATACGTGCACAGGTTCAGGTTGTGAAATGCACAGTGAAAAATATACCAATTGACATTACTTTCAATCAGATGACTGGACTTTGTACTCTATGCTTTTTGGAGCAGGTTGACCAACTTGCTGGAAAGAACCATATTTTCAAACGCAGTATTATCTTAATCAAGGCATGGTGTTGCTACGATAGTCGACTTCTTGGTTCACAGCATGGCTTGTTATCAACATACGCAACAGAAGTATTAGTCTTATATATTATCAATCGTTTTCATGCATCAGTGCGTGATCCTTTAGAGGTTCTATACATATTTTTTGACTACTACGGCACATTTGATTGGGAGCATAATTATATGAGTATATGGGGTCCAAAAGCCTTATCATCCCTTCCTGAAATTGTTGATAGACCAGAATGTGATCAGGATGAATTCTTGCTCCATAAAGAGTTTCTCATAAACTACAGGGATATTTTCTCTTCCAAAGCAAAGTCATCCGAGACTACGACCAATACATTTCCCGTTAAGCACATAAACATCTTGGATCCTCTAAGAAATGATAACAACCTTGGTCGCAGTGTCAACGAAGCCAGTTTTCATCGAATAAGATTTGCTCTTTCCTACGGTGCTAAAAAGTTTAAGCAGATCTTCACGCTCGCAGGAGAAAACATGGGTGAGGCACTGGAGAAGTTTTTCTTCGACACTTTGCAAAGGAATGGGAAAGGAGAAAGGGCAGATGTAGATGTTCCTGTTTCTCCATTTGGTACTGGAAGATATGAAAAGTCTGTCCTCGATGGAGATTGTGATAGTTACTATGGTGGCTCACAATATGCTCAACAATATCCTAATTATGCCATGCCAACAACAACTATACATTCCAATTCTCCATCATCACCTTCTCAGGACGATATCCTTGCACTATCTACACAACAAAATTGGAGTGAAGGTGATCTCCTTGCATTATCAACACAACAAAACTGGAGTATGTATTATCAAAGCGTTTACAATGGATATATCCCAGGACAAACACTTTTTCATCCAACTTACAACTTTGAAGAAGGAGGAAGATCACGAGGAACAGGCACATATATACCTGACTTGAATTATAATTGCTACTGGGATATACGTGCAAAGGTGAACAGGCCAAGGAGATTTCCTTCTGCAAAGCACAATGCATTGCTCAAATCATGTCCCAAAAGGAAAGAAGCGGAGGAGGTTCATTTTGAGACAAACATGAATGATAATTCAAAACCGTTTGAGCTTTCAAATGAAGACTTCCCCCTTATTCTAGGCATTCGCAAGGCTACATCGCCAACACAAGCACAGGAGTCAGCTCCATTTGCAAATGTTCATTCTGAGACAAACAAGGATGGTGGTAACTCAAGGTTCTATGAGCCCTCAAATGAAACACATGCCAAAGAGCCTGCTCTGCTGGCAAAGGTTCTTTCTAAGACAGACAAGCCTAGTAATCCGTGGTCGTTTGAGCTTGTAAAGGAAGATTTTCCTCTTCTTCCAAAGGTTTGTTCTGAGCCACGCATGGATGATAATTCAAAGTCTTTTGATCTCTCAAAGAAAGATTTTCCCCCTCTTCAACGCAGTCACAAGATTGTTCCATCAAAGTCTAATCAGCCAACTAAGTATGAGAAAATTTCATCATCCTCTAAAGAGTCTAAATTGAAAAATGTTGAGTTTGGAACTCATAAGCTTTCACAATCACTGGCAGAACAAAGTATGTCAACAAAGGGTGAGAAAGAAATTTCTGGTGTTTCATCATCCCAGGAAACTAAGCTGGTAGTTCCAAAGGTGGCATTGTAG

Predicted protein sequences of Glyma06g14941

Limit To All Plant Sequences

>Glyma06g14941.1   sequence type=predicted peptide   gene model=Glyma06g14941   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSKRENLLLSSLPRQLLSIDEELWRMTEERIQEILWTIQPNVLSEMNRKNVLNYVQKLIGDYYDTKVFPFGSFPLKTYLPDGDIDLTVINHEDEEENLAKEICTILECANDLIYQVKDIEHIRAQVQVVKCTVKNIPIDITFNQMTGLCTLCFLEQVDQLAGKNHIFKRSIILIKAWCCYDSRLLGSQHGLLSTYATEVLVLYIINRFHASVRDPLEVLYIFFDYYGTFDWEHNYMSIWGPKALSSLPEIVDRPECDQDEFLLHKEFLINYRDIFSSKAKSSETTTNTFPVKHINILDPLRNDNNLGRSVNEASFHRIRFALSYGAKKFKQIFTLAGENMGEALEKFFFDTLQRNGKGERADVDVPVSPFGTGRYEKSVLDGDCDSYYGGSQYAQQYPNYAMPTTTIHSNSPSSPSQDDILALSTQQNWSEGDLLALSTQQNWSMYYQSVYNGYIPGQTLFHPTYNFEEGGRSRGTGTYIPDLNYNCYWDIRAKVNRPRRFPSAKHNALLKSCPKRKEAEEVHFETNMNDNSKPFELSNEDFPLILGIRKATSPTQAQESAPFANVHSETNKDGGNSRFYEPSNETHAKEPALLAKVLSKTDKPSNPWSFELVKEDFPLLPKVCSEPRMDDNSKSFDLSKKDFPPLQRSHKIVPSKSNQPTKYEKISSSSKESKLKNVEFGTHKLSQSLAEQSMSTKGEKEISGVSSSQETKLVVPKVAL*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain