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Report for Sequence Feature Glyma06g14860

Feature Type:gene_model
Chromosome:Gm06
Start:11640000
stop:11644618
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g14860
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G40550AT Annotation by Michelle Graham. TAIR10: E2F target gene 1 | chr2:16934927-16938033 FORWARD LENGTH=589 SoyBaseE_val: 0ISS
GO:0000724GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair via homologous recombination SoyBaseN/AISS
GO:0006260GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication SoyBaseN/AISS
GO:0006261GO-bp Annotation by Michelle Graham. GO Biological Process: DNA-dependent DNA replication SoyBaseN/AISS
GO:0006270GO-bp Annotation by Michelle Graham. GO Biological Process: DNA replication initiation SoyBaseN/AISS
GO:0006275GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication SoyBaseN/AISS
GO:0006301GO-bp Annotation by Michelle Graham. GO Biological Process: postreplication repair SoyBaseN/AISS
GO:0006306GO-bp Annotation by Michelle Graham. GO Biological Process: DNA methylation SoyBaseN/AISS
GO:0007062GO-bp Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion SoyBaseN/AISS
GO:0008283GO-bp Annotation by Michelle Graham. GO Biological Process: cell proliferation SoyBaseN/AISS
GO:0009555GO-bp Annotation by Michelle Graham. GO Biological Process: pollen development SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0016444GO-bp Annotation by Michelle Graham. GO Biological Process: somatic cell DNA recombination SoyBaseN/AISS
GO:0022402GO-bp Annotation by Michelle Graham. GO Biological Process: cell cycle process SoyBaseN/AISS
GO:0031047GO-bp Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0051302GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell division SoyBaseN/AISS
GO:0051567GO-bp Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0042555GO-cc Annotation by Michelle Graham. GO Cellular Compartment: MCM complex SoyBaseN/AISS
GO:0043601GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear replisome SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG2545 KOG Conserved membrane protein JGI ISS
PTHR13489Panther UNCHARACTERIZED JGI ISS
PF09739PFAM Conserved membrane protein (DUF2044) JGI ISS
UniRef100_I1KB84UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KB84_SOYBN SoyBaseE_val: 0ISS
UniRef100_I6UEI0UniRef Annotation by Michelle Graham. Most informative UniRef hit: E2F target protein 1 n=1 Tax=Beta vulgaris RepID=I6UEI0_BETVU SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g14860
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14860
ParalogEvidenceComments
Glyma04g39990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14860 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g143400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g14860
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g14860
>Glyma06g14860.1   sequence type=CDS   gene model=Glyma06g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGGCCCACAGTACGATTTTCTGGCGAACCCTTTGGGCGTCGTCAGATCCACCTTCGATGCCGCCGTAGCCTCTGTTTCCGATCCCTCCGCCTTCGACGGGCGCGACTGGGGCGTCTTCCCGCTCTTCCACCACTTCCTCTCCGACCAGTCCAGTCTCTCTCAGGTTCCACTTCTGACCCCTGCCACCATCAAATGGGTGAAGCCTAATACTCTGGTTCGGTTTCGCGGGATGATACAAGACATGCTCGGGAACGAATTTTACATTGGCGCTTATAAGGATGGTTCGGTGTGGAGGACGAACAAGTTTATGGATGTTTCTCAATCTCTTATGGCTTCTTCGGTGGATATGCGAATCTGGGAACGTCGACTGCTTTATTGTGTTCCGGTTCCAGGACTGAGTCCATGGACTCAAGTTTCAGTTGAAGAATTTGGCGATCTATCTATGGATTGCAAATCGGAGAATAGAGAAAAGCGGAGGAGAGAAGATGGCGAGTCTTCTGATATGCCTGTATCTGGTGATGAGGTTCAGAATTCCCCAAATAGTAAAAGAATGAGAGAAGGTGAACACTCTTCTGTTGCTTCTCATTCTCAGGGAGCTGCAACTGAGATTGCCAGCTCTGGTACCAGTTTGGTGTCTGGTCTTGATAGCAATTCACCTCCCTGTCTTGTGAAGATATATGATTCTCCAGATTCTGAATTGAAACTGAATGACATTTTTGAGTTTGTGGGTATCCTTACATCTGATCTAGAGCTTGAAGAGGACGATGAAGATTGTGATTTATCAGATGGATTTTCTGAAGATCCTTTGCGTCATCTCCCACCTAGCAAGGTGCCACACCTTCATTGTTTTATTCAGAGGAAATTAGCGGTTCACGACTTCCTTCAGCACAATCCTATTGTAGAGCCAAGGCCCAACTTGGTCAGAGGAATCAGGGAAGCATTGCTAAGGCATCTCACGGCTGTTCTTAGCAATGATGATTTGGCTACTCATTTCATGTTGCTGCATCTTCTATCCAAGGTGCATGCTAGAGCAGATGATCTTGCTGTGGGAAAGCTTTCATTAAATCTTACTTGTTTTAGCAAAGAAACCGTGTCTGTATTTGGAAAACCACTAAGCGTTGCTTTGAAGAACCTCCTGCCATTCACATTTTGCATACCCCTTACAGTTGAATACTTGAATTCTGTTTCACTTACGCCAAAAAAGAATTACGATACTAATAGACTGGAAACTGGAGTCTTACAACTAGCTGAAGGTTCACACTTGATTGTTGATGAGACCAAACTAGAAGCTGGAACTCTCAACTCTGTAGGGGTAGAGAATACAAGGCTACTGAAAAATTTAATGGAATTGCAAAAGGTTGAATATGATTTCAAGTACTATAAAGTGGATATGACAACTGATTTCCAACTGCTAGTTTTGTCGGAGGGGAAATCAAATATCTTGCCAGCCGATGTAATTGTACCGTTCCGACCTTCTGCAACCAGTTGCTCTGGAGCTGTGACTGCAGAAGCTTTGGAGGCCTGGAGGTGGTATTTGGCCACTGTCAGACAGCTATCACACACTATTGAACCAGAAATGCAGAAGGTGATAGAAAGTGATCTAGTTGCAGCAAGACAAGCAGACAGGAGCTTGAGCTCCCAAGATTTAAGCAGATTGGTAACAATGGGCCGTCTCATGTCATTGAGCTATGGTGAGACCAGCTTGTCACTAGAACATTGGCAAATGGTCAAGGAACTAGAAAGGCTGCGAAGAGAGAGGCTATAA
Predicted protein sequences of Glyma06g14860
>Glyma06g14860.1   sequence type=predicted peptide   gene model=Glyma06g14860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVGPQYDFLANPLGVVRSTFDAAVASVSDPSAFDGRDWGVFPLFHHFLSDQSSLSQVPLLTPATIKWVKPNTLVRFRGMIQDMLGNEFYIGAYKDGSVWRTNKFMDVSQSLMASSVDMRIWERRLLYCVPVPGLSPWTQVSVEEFGDLSMDCKSENREKRRREDGESSDMPVSGDEVQNSPNSKRMREGEHSSVASHSQGAATEIASSGTSLVSGLDSNSPPCLVKIYDSPDSELKLNDIFEFVGILTSDLELEEDDEDCDLSDGFSEDPLRHLPPSKVPHLHCFIQRKLAVHDFLQHNPIVEPRPNLVRGIREALLRHLTAVLSNDDLATHFMLLHLLSKVHARADDLAVGKLSLNLTCFSKETVSVFGKPLSVALKNLLPFTFCIPLTVEYLNSVSLTPKKNYDTNRLETGVLQLAEGSHLIVDETKLEAGTLNSVGVENTRLLKNLMELQKVEYDFKYYKVDMTTDFQLLVLSEGKSNILPADVIVPFRPSATSCSGAVTAEALEAWRWYLATVRQLSHTIEPEMQKVIESDLVAARQADRSLSSQDLSRLVTMGRLMSLSYGETSLSLEHWQMVKELERLRRERL*






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