Glyma06g14820 - SoyBase

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Report for Sequence Feature Glyma06g14820

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11615465
stop:	11617470
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G05270	AT	Annotation by Michelle Graham. TAIR10: Chalcone-flavanone isomerase family protein \| chr5:1563543-1564827 FORWARD LENGTH=209	SoyBase	E_val: 3.00E-77	ISS
GO:0009718	GO-bp	Annotation by Michelle Graham. GO Biological Process: anthocyanin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0009744	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus	SoyBase	N/A	ISS
GO:0009813	GO-bp	Annotation by Michelle Graham. GO Biological Process: flavonoid biosynthetic process	SoyBase	N/A	ISS
GO:0010224	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to UV-B	SoyBase	N/A	ISS
GO:0042398	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular modified amino acid biosynthetic process	SoyBase	N/A	ISS
GO:0080167	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to karrikin	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intramolecular lyase activity	SoyBase	N/A	ISS
GO:0045430	GO-mf	Annotation by Michelle Graham. GO Molecular Function: chalcone isomerase activity	SoyBase	N/A	ISS
PF02431	PFAM	Chalcone-flavanone isomerase	JGI		ISS
UniRef100_C6T391	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=C6T391_SOYBN	SoyBase	E_val: 1.00E-142	ISS
UniRef100_G3LT02	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Chalcone isomerase n=1 Tax=Arachis hypogaea RepID=G3LT02_ARAHY	SoyBase	E_val: 2.00E-107	ISS

Proteins Associated with Glyma06g14820

Locus	Gene Symbol	Protein Name
	CHI4	chalcone isomerase 4

Expression Patterns of Glyma06g14820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g14820 not represented in the dataset	Glyma06g14820 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14820

Paralog	Evidence	Comments
Glyma04g40030	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g143000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g14820

Limit To All Plant Sequences

>Glyma06g14820.2   sequence type=transcript   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGCATGCCACTGTAAGATTAAACACTTGAGAGATTCATATTCCTGGTCTTACTATGAACTATGATGTGATGTTCAGATAAAAGGTTTAGGTAGTAGCCAACCTTAACAAATGAAAAGAAGTTAGCAATTGATAAAACTCACAGGTGCATCAACTTGCTCTACCTACCCACCTTATTTTCGGCCTTGTCAGGAACAAAGGGTCTAAATAAATAGCCTTACATAACGACTCTAATTAACTCACCCTTTTTGTAAAAACCTCTCTCAGAGTTTGCTCACCCCTACTCTTCTTCCAGTCTCTATCTCAATCTCCATCAAATTTAACTATGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTACCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGAACATAACTTTGTATGGTGTAATAATCTTGGGGTCTGTGTTTTGTGTTGCTAAGTTGCAGTAATTGGAATTTTTCTCCACACAATGTTTTGCGGATTTCTGCTTTTGAACTTTTCGGAATAATGTTAATCTTGTGACTTGCCAAATTCTTAAGTGCTCTTTGTATGGTTATTCTTCATGCTGTTGGAACACATACATAATAAATCAACGCCCACACTACAAGTTTGAGTTTTTTACTTTTGATGGTGAATACATTT

>Glyma06g14820.3   sequence type=transcript   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGGCATGCCACTGTAAGATTAAACACTTGAGAGATTCATATTCCTGGTCTTACTATGAACTATGATGTGATGTTCAGATAAAAGGTTTAGGTAGTAGCCAACCTTAACAAATGAAAAGAAGTTAGCAATTGATAAAACTCACAGGTGCATCAACTTGCTCTACCTACCCACCTTATTTTCGGCCTTGTCAGGAACAAAGGGTCTAAATAAATAGCCTTACATAACGACTCTAATTAACTCACCCTTTTTGTAAAAACCTCTCTCAGAGTTTGCTCACCCCTACTCTTCTTCCAGTCTCTATCTCAATCTCCATCAAATTTAACTAGAATCACCGACATGGAGATTCACTTCATCCATGTGAAATTCTATTCAATCGGGGTTTATTTGGAGCCAGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGAACATAACTTTGTATGGTGTAATAATCTTGGGGTCTGTGTTTTGTGTTGCTAAGTTGCAGTAATTGGAATTTTTCTCCACACAATGTTTTGCGGATTTCTGCTTTTGAACTTTTCGGAATAATGTTAATCTTGTGACTTGCCAAATTCTTAAGTGCTCTTTGTATGGTTATTCTTCATGCTGTTGGAACACATACATAATAAATCAACGCCCACACTACAAGTTTGAGTTTTTTACTTTTGATGGTGAATACATTT

Coding sequences of Glyma06g14820

Limit To All Plant Sequences

>Glyma06g14820.1   sequence type=CDS   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTACCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATGGAATCACCGACATGGAGATTCACTTCATCCATGTGAAATTCTATTCAATCGGGGTTTATTTGGAGCCAGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGA

>Glyma06g14820.2   sequence type=CDS   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTGAAGAGGTTTTGGTTGATGAAATCACTTACCCTACCAAGATCACTACTACCAAGCCCCTATCTTTGCTTGGCCATGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGA

>Glyma06g14820.3   sequence type=CDS   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTCACTTCATCCATGTGAAATTCTATTCAATCGGGGTTTATTTGGAGCCAGAAGTAGTAGGCCACTTGGACCAGTTCAAAGGAAAATCTGCAAAGGAGCTGGAAGATAATGAAGAGTTCTTCAATGCTCTCATTTCTGCCCCGGTGGAGAAGTTTATTAGACTTGTGGTGATCAAAGAGATCAAGGGTGCACAGTATGGGGTTCAGATTGAGACTGCGGTGAGGGATAGGTTGGCAGCTGAGGACAAATATGAGGAGGAAGAAGAAGAAGCTTTGGAAAAAGTTATTGAATTTTTCCAGTCCAAGTACTTCAAGAAACTTTCAGTGATCACATACCATTTCCCAGCAAATTCTGCCACTGCTGAGATTGTGGTATCTTTGGAGGGGAAAGAAGACTCCAAGTATGTGATAGAGAATGCCAATGTGGTAGAGGCCATCAAGAAATGGTACCTTGGTGGCTCAAGTGCGGTTTCTTCCTCAACCATTCAATCTCTGGCTAGCACTTTCTCGCAGGAGTTGTCCAAGTGA

Predicted protein sequences of Glyma06g14820

Limit To All Plant Sequences

>Glyma06g14820.1   sequence type=predicted peptide   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATEEVLVDEITYPTKITTTKPLSLLGHGITDMEIHFIHVKFYSIGVYLEPEVVGHLDQFKGKSAKELEDNEEFFNALISAPVEKFIRLVVIKEIKGAQYGVQIETAVRDRLAAEDKYEEEEEEALEKVIEFFQSKYFKKLSVITYHFPANSATAEIVVSLEGKEDSKYVIENANVVEAIKKWYLGGSSAVSSSTIQSLASTFSQELSK*

>Glyma06g14820.2   sequence type=predicted peptide   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATEEVLVDEITYPTKITTTKPLSLLGHEVVGHLDQFKGKSAKELEDNEEFFNALISAPVEKFIRLVVIKEIKGAQYGVQIETAVRDRLAAEDKYEEEEEEALEKVIEFFQSKYFKKLSVITYHFPANSATAEIVVSLEGKEDSKYVIENANVVEAIKKWYLGGSSAVSSSTIQSLASTFSQELSK*

>Glyma06g14820.3   sequence type=predicted peptide   gene model=Glyma06g14820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIHFIHVKFYSIGVYLEPEVVGHLDQFKGKSAKELEDNEEFFNALISAPVEKFIRLVVIKEIKGAQYGVQIETAVRDRLAAEDKYEEEEEEALEKVIEFFQSKYFKKLSVITYHFPANSATAEIVVSLEGKEDSKYVIENANVVEAIKKWYLGGSSAVSSSTIQSLASTFSQELSK*

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