Glyma06g14770 - SoyBase

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Report for Sequence Feature Glyma06g14770

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11581541
stop:	11586327
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G56370	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr3:20899403-20902390 REVERSE LENGTH=964	SoyBase	E_val: 0	ISS
GO:0000272	GO-bp	Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0007389	GO-bp	Annotation by Michelle Graham. GO Biological Process: pattern specification process	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0008361	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of cell size	SoyBase	N/A	ISS
GO:0009664	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization	SoyBase	N/A	ISS
GO:0009832	GO-bp	Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis	SoyBase	N/A	ISS
GO:0009926	GO-bp	Annotation by Michelle Graham. GO Biological Process: auxin polar transport	SoyBase	N/A	ISS
GO:0010015	GO-bp	Annotation by Michelle Graham. GO Biological Process: root morphogenesis	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0040007	GO-bp	Annotation by Michelle Graham. GO Biological Process: growth	SoyBase	N/A	ISS
GO:0048653	GO-bp	Annotation by Michelle Graham. GO Biological Process: anther development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF869	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_C6ZRZ8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Leucine-rich repeat transmembrane protein kinase n=1 Tax=Glycine max RepID=C6ZRZ8_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_C6ZRZ8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Leucine-rich repeat transmembrane protein kinase n=1 Tax=Glycine max RepID=C6ZRZ8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g14770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14770

Paralog	Evidence	Comments
Glyma04g40080	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g142500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g14770

Limit To All Plant Sequences

>Glyma06g14770.1   sequence type=CDS   gene model=Glyma06g14770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGAGTGCTATTTTCAAGCATGAGAGTTTTTCTTCTTCTTGTGTGGTTGTTGGAGCTGGTTTGTGTTTCGGTGACCGCCGTGAACCCTTCTCTGAACGACGACGTTTTGGGGCTTATAGTGTTCAAAGCTGACATACGAGATCCGAAGGGGAAGCTCGCTTCTTGGAACGAGGACGATGAGAGCGCGTGTGGTGGTAGTTGGGTTGGGGTGAAGTGCAACCCTAGATCCAATAGAGTGGTGGAGGTTAACCTTGATGGGTTCTCGCTCTCTGGGAGAATAGGTAGAGGGTTGCAAAGGTTGCAGTTTCTAAGAAAGCTTTCACTGGCGAATAATAACCTCACTGGTGGGATAAACCCCAACATTGCTCGGATTGATAACCTTAGGGTCATTGACTTGAGTGGGAATAGTCTCTCAGGGGAGGTTTCTGATGATGTTTTCCGACAATGTGGGTCTCTCAGGACTGTTTCCTTGGCCAGGAACAGGTTTTCTGGGAGCATTCCCTCTACTTTGGGGGCATGTTCTGCTCTTGCTTCTATCGACCTTTCTAATAACCAGTTTTCTGGTTCTGTTCCCTCCGGGGTTTGGTCCTTGAGTGCTCTCAGGTCTCTGGATTTGTCTGATAACTTGTTGGAGGGTGAGATTCCTAAGGGGGTTGAGGCGATGAAGAATTTGAGGAGTGTTAGTATGACGAGGAATCGGTTGACCGGGAATGTTCCTTTTGGGTTTGGGAGTTGTTTGCTATTGAGGTCTATTGATTTAGGGGATAATTCTTTTTCTGGGAGTATTCCTGGTGATCTTAAGGAACTTACATTGTGTGGTTATCTTAGCTTGCGTGGGAATGCTTTCTCGAGGGAGGTTCCTGAGTGGATTGGGGAGATGAGAGGGCTTGAGACGTTGGACCTTTCGAACAATGGGTTTACCGGTCAGGTGCCGAGCTCTATTGGAAATCTTCAGTTGCTGAAGATGTTAAATTTTTCTGGAAATGGTCTCACTGGTAGTCTGCCGGAGTCTATTGTGAATTGCACAAAACTTTCGGTGTTGGATGTCAGCCGGAATTCGATGTCCGGGTGGCTTCCGTTGTGGGTTTTCAAGTCAGATTTGGACAAGGGTTTGATGTCAGAAAATGTACAGAGTGGGAGCAAGAAAAGCCCTTTGTTTGCCTTGGCTGAAGTCGCGTTTCAAAGTCTTCAGGTTTTGGATTTGTCTCACAATGCGTTTTCTGGCGAAATCACATCTGCAGTTGGAGGTTTAAGCAGCTTGCAGGTTTTGAATTTAGCAAACAACTCTCTCGGAGGTCCTATTCCAGCTGCCATTGGTGAATTGAAAACATGTTCAAGTCTTGATTTGAGCTATAATAAGCTGAATGGAAGCATACCTTGGGAAATAGGAAGAGCTGTGTCCTTGAAAGAACTGGTATTGGAAAAGAACTTCCTAAATGGGAAAATTCCATCGTCAATTGAGAACTGCTCTTTGCTAACAACTTTGATTCTGTCCCAGAACAAGCTGAGTGGTCCAATACCTGCAGCAGTTGCAAAACTTACTAACCTGCGAACTGTGGATGTATCGTTTAACAGTCTCACTGGAAACCTTCCTAAGCAATTGGCCAACCTTGCCAATCTTCTTACCTTCAATTTATCTCACAACAACCTTCAGGGTGAGCTGCCGGCTGGTGGTTTTTTCAACACCATTTCGCCTTCCTCTGTTTCTGGCAATCCATCTCTTTGTGGCGCTGCAGTAAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTCTAAATCCCAACACCTCTACTGACACTGGTCCGGGTTCATTGCCTCCAAATTTGGGTCATAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTTATTAGCATCACTGTTCTCAATCTCCGTGTTCGCTCCTCTACACCTCGTGATGCAGCTGCCCTCACATTTTCTGCAGGGGACGAATTCAGCCGTTCCCCGACTACAGATGCTAACTCTGGCAAGCTTGTCATGTTTTCGGGTGAGCCTGATTTCAGTTCTGGTGCGCATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGAGGATTTGGAGCAGTGTACCAAACTGTTCTTAGAGATGGACATTCAGTTGCTATAAAGAAGCTCACTGTGTCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAGAAATTAGGAAAAATCAGACACCAAAACCTCGTGGAACTCGAGGGTTATTATTGGACTACATCGCTGCAGCTGCTCATATACGAGTATGTCTCCGGTGGTAGTCTGTATAAGCATCTCCATGAAGGATCTGGTGGGAACTTCCTCTCATGGAATGAGAGGTTTAATGTGATTCTCGGAACAGCGAAGGCCTTGGCACACTTGCACCATTCCAACATTATTCACTATAACATTAAGTCAACCAATGTCCTTCTTGATAGTTACGGTGAACCAAAAGTAGGGGACTTTGGCCTAGCAAGACTGTTGCCAATGCTTGATCGATACGTTTTGAGCAGCAAAATTCAGAGCGCACTCGGCTACATGGCGCCAGAGTTTGCCTGCAAGACGGTGAAAATCACCGAGAAATGCGATGTATATGGGTTTGGTGTCTTGGTCTTGGAGATCGTCACAGGGAAGAGGCCAGTCGAATACATGGAGGATGATGTGGTGGTACTATGCGACATGGTGAGAGGGGCTTTGGAAGAAGGCAGGGTGGAGGAGTGCATTGATGAGAGGCTCCAAGGGAAGTTCCCAGCAGAAGAAGCTATTCCTGTCATGAAACTAGGCTTAATATGTACTTCTCAAGTGCCATCTAACAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGATGTCCCTCGGAAGGACAAGAAGAATTGGCATGA

Predicted protein sequences of Glyma06g14770

Limit To All Plant Sequences

>Glyma06g14770.1   sequence type=predicted peptide   gene model=Glyma06g14770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVLFSSMRVFLLLVWLLELVCVSVTAVNPSLNDDVLGLIVFKADIRDPKGKLASWNEDDESACGGSWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINPNIARIDNLRVIDLSGNSLSGEVSDDVFRQCGSLRTVSLARNRFSGSIPSTLGACSALASIDLSNNQFSGSVPSGVWSLSALRSLDLSDNLLEGEIPKGVEAMKNLRSVSMTRNRLTGNVPFGFGSCLLLRSIDLGDNSFSGSIPGDLKELTLCGYLSLRGNAFSREVPEWIGEMRGLETLDLSNNGFTGQVPSSIGNLQLLKMLNFSGNGLTGSLPESIVNCTKLSVLDVSRNSMSGWLPLWVFKSDLDKGLMSENVQSGSKKSPLFALAEVAFQSLQVLDLSHNAFSGEITSAVGGLSSLQVLNLANNSLGGPIPAAIGELKTCSSLDLSYNKLNGSIPWEIGRAVSLKELVLEKNFLNGKIPSSIENCSLLTTLILSQNKLSGPIPAAVAKLTNLRTVDVSFNSLTGNLPKQLANLANLLTFNLSHNNLQGELPAGGFFNTISPSSVSGNPSLCGAAVNKSCPAVLPKPIVLNPNTSTDTGPGSLPPNLGHKRIILSISALIAIGAAAVIVIGVISITVLNLRVRSSTPRDAAALTFSAGDEFSRSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIRHQNLVELEGYYWTTSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELA*

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