Glyma06g14590 - SoyBase

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Report for Sequence Feature Glyma06g14590

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11440525
stop:	11449101
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14590

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01960	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr5:370811-372775 FORWARD LENGTH=426	SoyBase	E_val: 0	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4638	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR15860	Panther	UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN	JGI		ISS
PF00097	PFAM	Zinc finger, C3HC4 type (RING finger)	JGI		ISS
UniRef100_G7KDC0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase synoviolin B n=1 Tax=Medicago truncatula RepID=G7KDC0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KB54	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KB54_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g14590

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14590

Paralog	Evidence	Comments
Glyma04g40220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14590 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g140600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14590

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g14590

Limit To All Plant Sequences

>Glyma06g14590.1   sequence type=CDS   gene model=Glyma06g14590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAATCGTCACCGTCGTCTTCGTCATCGTCGATGTCGTCGTCGTCTGGAAGCGATACCAGCGGTGGTGGTGGTGGTGGCGCTGTCACGTGGTTCGGGATGAGTTTCCCATTCCGTTCTCCGCTATCTCTCGTCATGGATTACTGCGCGCGCGAGGATTCCGCGGAGCCTGTGATTATCATTCCCCGCACGCGCCCTCGGTTTCAGGCGCATGCCGAATCCGCCTCTGCTTCGTCCTCTGATTCCGATGAGAATGCCTGCAACGGCGCTGCTGAGGAGGTTGCGATACGCATAATTGGGGCCGGCGAGCAGGAGAGCGGTTCGTCGCCATCGTCGTCGTCGAGGGGCCGGGGAGGGGAGCCGGGTTGTGAGGAGGCGGTGGTTGGGAGGAGTGGGATGCTTTCGTCGGAGGCTCGCCGGCGAATGGCGGAGGAAAGGGTGCCTTTGGTGTCTTTGGATGATGGGATTGGTGGCGTTAGGGAATCTTCCTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCATCGTCCTCTACTTACCAGAGGTATGATATTCAGCAGGTTGCGAAGTGGATTGAGCAGATTCTACCGTTTTCTCTCTTGTTGCTGATTGTTTTCATCCGCCAACATTTGCAAGGTTTCTTTGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACTGCCCTGAAGGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGCCTTTGTGCTGCATGTGATAAGCATTTACTGGTGGTATCAAAATGATGATCTTTTATACCCACTGGCCATGCTTCCACCAAAAACACCACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCAGCGATGGCTTTCAAATGTTTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTTTGATTGAGTATACTCTGCTGCTGTATCGTGCTTTGTTGCCAACACCAGTTTGGTACCGATTTTTCTTGAACAAGGATTATGGAAGTCTCTTTTCCTCATTGACTACAGGATTGTATCTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAATGCTTTGTTTCTGCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACGGAACAGGTGAATGCTGCTGGTGACTTGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCTGAATGGTTTGAGAGAGAACGAACTTGCCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTCTGTTTTTTCAGTTGTTTTAA

Predicted protein sequences of Glyma06g14590

Limit To All Plant Sequences

>Glyma06g14590.1   sequence type=predicted peptide   gene model=Glyma06g14590   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MESSPSSSSSSMSSSSGSDTSGGGGGGAVTWFGMSFPFRSPLSLVMDYCAREDSAEPVIIIPRTRPRFQAHAESASASSSDSDENACNGAAEEVAIRIIGAGEQESGSSPSSSSRGRGGEPGCEEAVVGRSGMLSSEARRRMAEERVPLVSLDDGIGGVRESSSSSSSSSSSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSVLLGISFAFVLHVISIYWWYQNDDLLYPLAMLPPKTPPPFWHTIFIILVNDTLVRQAAMAFKCLLLIYYKNGRGHNFRRQGQMLTLIEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVNAAGDLCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF*

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