Glyma06g14530 - SoyBase

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Report for Sequence Feature Glyma06g14530

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11411001
stop:	11415019
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G10840	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr3:3391207-3393281 REVERSE LENGTH=466	SoyBase	E_val: 1.00E-155	ISS
GO:0016556	GO-bp	Annotation by Michelle Graham. GO Biological Process: mRNA modification	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1454	KOG	Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily)	JGI		ISS
PTHR10992	Panther	ALPHA/BETA HYDROLASE RELATED	JGI		ISS
PTHR10992:SF237	Panther	HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN	JGI		ISS
PF00561	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_B9S4I1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Alpha/beta hydrolase, putative n=1 Tax=Ricinus communis RepID=B9S4I1_RICCO	SoyBase	E_val: 3.00E-165	ISS
UniRef100_I1KB51	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KB51_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g14530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g14530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g140200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g14530

Limit To All Plant Sequences

>Glyma06g14530.1   sequence type=CDS   gene model=Glyma06g14530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATGATGATGGTAAGGATAGGGATGTTTTATGGGGAACTGGGTTCTTCTACTCTTTGTTTATCCCATCGCTGCAATAACTCTACACTTTCACATATACACAAACATCCCTCTCCTCTAATATCTCCAAACTATGCTGCTACTCACACTCACAACAAACGATTAGTTGCTTCTGCTTCTTCAGCTCCATCAGTTAGCGGTTCAGGTGCTGAATATTCCGAGCAGATGGTGGATGTGGGAGCAAAAAAGAAAAAGAAGAGTATAGCAGGCATAGATCAGGACGAATTAGTGGATCCAAAGCTTTTAGCTGATCTAGACAGTTGTTTTTGTGAGTTCAAAGGAGTGCATATACACCACAAGATATGTGATGCCGAATCAAAAGCACAAAGCACACCCCAGAGTCGGACTGTTTCTCATCAAATCAAGAAGCTAGGTTATCCTATGATTTTGTTACATGGATTTGGTGCCTCAGTTTTCTCATGGAAACAGGTTATGAAGCCGTTGGCCGAGGTTGCTGGTTCAAAAGTTCTTGCTTTTGATAGGCCAGCCTTTGGATTGACATCAAGGGTAAATTTATCTAGGCATCCTTCTTCAGAAACAGAAGACGCAAAACCTCTAAATGCATACTCAATGGCATTTTCCGTGCTTGCTACCCTGCACTTCATTAAATTACTAAATGCTCAGAAGGTGATTTTAGTGGGGCACTCAGCTGGTTCACTTGTAGCAGTTAATACTTATTTTGAAGCTCCAGAACGTGTTGCTGCTCTGATTCTAGTTGCCCCAGCAATTTTTGCCCCACTTACTACACGGAAAGTTGTTAAAGAAAATCAATCAGGACATGATAACCAAACGGAAGAAGACAACAGTTCCATCAGAAAAAATCCAATTTTGGGGCTTTACAAGATGTTGTCCAAGACTACCAAGTACATTGCAGAGGCAATATCACAGATGATGAAGTGGACAATAGATATCCTCAACTTTTGGTACAGAAAATTGTTATCAGCTATCCTGCGTTCTTCCCTTGCTATAATGCTGGTAAGAATGGCAATTGATAAGTTCGGTACTACTGCAGTTCGAAATGCATGGTATGACCCAAAGCAGGTTGCTGAGCATGTCCTTAGTGGTTATATAAAGCCTTTAAGGATTAAGAATTGGGATAGGGCACTGGTGGAATACACTGCAGCAATGCTTCTGGATGAGGAATCTAAAACAAAGCCATCACTTTCTAAAAGGCTTCATGAAATATCATGTCCTGTTCTGATTGTAACTGGTGATACTGATCGAATAGTCCCTTCATGGAATGCTGAGAGACTTTCACGAGTCATACCAGGAGCATCTTTTGAAGTAATTAAGCAATGTGGTCATCTGCCCCATGAAGAAAAAGTGGAGGAGTTCATTTCAATTGTTGAAAACTTCCTAAGGAGATTAGTGAGTGATTCAAACGAACAATATCTACAAGAAGCAACTGCATAG

Predicted protein sequences of Glyma06g14530

Limit To All Plant Sequences

>Glyma06g14530.1   sequence type=predicted peptide   gene model=Glyma06g14530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MMMMVRIGMFYGELGSSTLCLSHRCNNSTLSHIHKHPSPLISPNYAATHTHNKRLVASASSAPSVSGSGAEYSEQMVDVGAKKKKKSIAGIDQDELVDPKLLADLDSCFCEFKGVHIHHKICDAESKAQSTPQSRTVSHQIKKLGYPMILLHGFGASVFSWKQVMKPLAEVAGSKVLAFDRPAFGLTSRVNLSRHPSSETEDAKPLNAYSMAFSVLATLHFIKLLNAQKVILVGHSAGSLVAVNTYFEAPERVAALILVAPAIFAPLTTRKVVKENQSGHDNQTEEDNSSIRKNPILGLYKMLSKTTKYIAEAISQMMKWTIDILNFWYRKLLSAILRSSLAIMLVRMAIDKFGTTAVRNAWYDPKQVAEHVLSGYIKPLRIKNWDRALVEYTAAMLLDEESKTKPSLSKRLHEISCPVLIVTGDTDRIVPSWNAERLSRVIPGASFEVIKQCGHLPHEEKVEEFISIVENFLRRLVSDSNEQYLQEATA*

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