Report for Sequence Feature Glyma06g14500
Feature Type: gene_model
Chromosome: Gm06
Start: 11384952
stop: 11389666
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g14500
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G54190 AT
Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr3:20061759-20063880 REVERSE LENGTH=467
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1KB48 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KB48_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q9C5G8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: AT3g54190/F24B22_150 n=1 Tax=Arabidopsis thaliana RepID=Q9C5G8_ARATH
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g14500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g14500
Paralog Evidence Comments
Glyma04g40290 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g14500 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g139900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g14500
Coding sequences of Glyma06g14500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g14500.1 sequence type=CDS gene model=Glyma06g14500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGGTGGCAAGAGAATTACGGTGAGCCCTCGACCTTGCTGCGGCCGCAGAATCGTTGCCGCGAAGAAGAGACCGCGTGCGAACGATGGCTTCGTCAACAGCGTCAAGAAACTACAGAGACGCGAAATCAGCTCCAAGCGTGATCGCGCTTTCACCATGAGCGACGCTCAAGAGAGATTCCGGAATATTCGCTTGCAGGAAGAATATGATACGCATGATCCGAAAGGTCCTTCATCTATGGTGTTGCCGTTTCTGAGAAAAAGATCAAAGATTATTGAGATTGTAGCAGCACGCGATATTGTTTTTGCTCTTGCACAATCGGGTGTTTGTGCGGCATTTAGCCGAGAGACCAATCAACGGATATGCTTTTTGAATGTTAGTCCTGATGAAGTTATAAGAAGTCTGTTTTATAACAAAAATAACGACTCACTTATCACAGTTTCTGTATATGCTTCAGACAGTTACAGTTCTTTGAAGTGCAGAAGCACAAGGATTGAATATATAAGGAGGGGTACACCAGATGCTGGCTTTGCTCTTTTTGAATCCGAGTCTCTGAAGTGGCCAGGTTTTGTTGAGTTTGATGATGTAAATGGGAAGGTATTAACGTACTCTGCTCAAGACAGCATATACAAGGTATTTGACCTGAAAAACTATACGATGCTGTACTCTATTTCGGATAAAAATGTCCAAGAGATTAAGATCAGCCCGGGAATCATGTTGTTGATTTATGCTAAAGCAAGTAGCCATGTCCCCCTTAAAATCCTTTCAATAGAAGATGGTACTATTTTGAAGTCATTCAGTCATCTCCTTTATCGGAATAAGAAGGTAGATTTTATTGAACAGTTCAACGAAAAGCTACTTGTAAAGCAAGAAAACGAGAACCTCCAAATTCTTGATGTGCGGACTTTTGAACATACGGAAGTTTGCAGAAGTGAATTTATGACACCGTCTGCATTTATTTTTCTATATGAGAACCAATTGTTCCTAACATTTCGAAATCGTACTGTGGCTGTGTGGAACTTCCGTGGAGAGCTGGTAACTTCTTTTGAGGATCACCTCTTGTGGCATCCTGACTGCAACACCAACAATATATATATAACCAGTGACCAGGATCTTATCATATCCTACTGTAAAGCTGATTCTGATGATTCGTTGTCTGAAGGAAATGCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAATAAGAGCAAGTAACAGCTTTCCAGTGGATAACAGTTGCAGTGACAATCCTTCAGGTAGCTGTTGTTGTAATTCAAAGAAGCGAAAACATGGATCCAAGACGAGGAGCACTGTTGCAGAAGCCTTGGAAGACATTACTGCTCTCTTCTATGATGAAGAGCGCAATGAAATCTATACAGGCAACAGGCATGGACTAGTTCATGTCTGGTCCAACTAA
Predicted protein sequences of Glyma06g14500
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g14500.1 sequence type=predicted peptide gene model=Glyma06g14500 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGGKRITVSPRPCCGRRIVAAKKRPRANDGFVNSVKKLQRREISSKRDRAFTMSDAQERFRNIRLQEEYDTHDPKGPSSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGTPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIYAKASSHVPLKILSIEDGTILKSFSHLLYRNKKVDFIEQFNEKLLVKQENENLQILDVRTFEHTEVCRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDSLSEGNAGSINVSNILTGKCLAKIRASNSFPVDNSCSDNPSGSCCCNSKKRKHGSKTRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN*