SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G24650 | AT | Annotation by Michelle Graham. TAIR10: Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein | chr5:8437123-8438859 FORWARD LENGTH=259 | SoyBase | E_val: 1.00E-108 | ISS |
| GO:0015031 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein transport | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0005744 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane presequence translocase complex | SoyBase | N/A | ISS |
| GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
| GO:0005774 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0015450 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | SoyBase | N/A | ISS |
| PTHR14110 | Panther | TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE TIM22 | JGI | ISS | |
| PF00536 | PFAM | SAM domain (Sterile alpha motif) | JGI | ISS | |
| PF02466 | PFAM | Tim17/Tim22/Tim23 family | JGI | ISS | |
| UniRef100_G7J9P9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: SAM domain family protein n=1 Tax=Medicago truncatula RepID=G7J9P9_MEDTR | SoyBase | E_val: 1.00E-143 | ISS |
| UniRef100_I1KB42 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KB42_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g14420 not represented in the dataset |
Glyma06g14420 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g40360 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g139200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g14420.2 sequence type=transcript gene model=Glyma06g14420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CGTTGAGAGAGACAGGTTAGTTGGATACAAAAGTGGCATCGCTCGCAGTTTGATAGGGTGCGTGACAAGTATAAAAGGGACAACATTGAAGACAACGTTATCATATCCTTCTTTGCTTGGAATGGAACAAGCTGGGAAGCAAGGAATTATGGTGGCGTCTCAGAGTCAAAACCCCATTGAGCAAATCCAAGCGCGCTTCAAGGACTTGGAAACTGGATTCCGCCTCTGGCTCTCCAAGCAGTCCCTCCCCGTCGAGGCCGCCGTCGTCACCACCACCAGCGCCGCCCAGGGCGCCGCCATCGGCGCCTTCATGGGCACCCTCACCGCCGACGCCTCCTCCACCTTCCCCACCCCTCCTCCCAACGCCTCTCTCAATCCCCAAGCCATGGCGTCTCTTAAACAAGCGCAGGCTCTAGCTGGAGGTCCTTTAATTCAGGCGCGAAACTTTGCTGTGATGACGGGAGTGAACGCTGGGATTTCCTGTGTCTTGAAAAGGATAAGGGGAAAGGAAGATGTCCAGTCTAGCATGGCGGCAGCTTTTGGTTCAGGGGCCTTGTTTTCATTAGTAAGTGGCATGGGTGGACCAAATCAAGCAACAAATGCACTCACTTCTGGACTTTTCTTTGCACTTGTTCAAGGTGGACTTTTCCAGATAGGACAAAAGTTTTCTCAACCACCTGCTGAAGATACTCACTATGCTAAAACAAGACACATGTTGAACAATCTTGGCCTTCAGAGTTACGAAAAGAATTTCAAGAAAGGCTTGTTAACAGACAACACTCTGCCTTTACTCACAGACAGTGCTCTCAGAGATGTGAGGATTCCTCCTGGACCTAGGCTTTTGATTCTTGACCACATCCAGAGGTAGGAGTTCTGCTTTATGTATTGTAGTATGTACCATATCCTTCATTTTCCATACTCATAGATACTGAAGTCTGGTTTCAGGGACGCGGATTTGAAAGATAAGCGAGGAAGCCGAAAGTGACTGATATGAATAGTTTGCTGGCTTGGAACTTTGAAAGCCATTGAAAAATGGATAGTAGAAAGTTTGTGTTGCAAATGAATTTTGTCTTTTTTGTTTGTTAGCTCTGTTCCATTGTTGTTGCAGTGTACTTGATAAAATTTGGTTAACTAATCAGTTATTTTAGTTGTGCCATGACACGTAAATGGCTTGAAAGTAAATTAGGGAGCACGAATTTGTTAACTCTAAAATAAGAAAAGTTATTGCTTCCTTGTGTAGGAATTGTTACGTTTGATTTCATTAGTTCAGTCAATGATCCGTTCCACAGAGATAAATAGATAATGCTAATCGGAACGGAAGAAAAAGACTTGCGCCACTATTATTATTGAAAGTGACTTGCTTTTTGAGTGATCGATCATT
>Glyma06g14420.1 sequence type=CDS gene model=Glyma06g14420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACAAGCTGGGAAGCAAGGAATTATGGTGGCGTCTCAGAGTCAAAACCCCATTGAGCAAATCCAAGCGCGCTTCAAGGACTTGGAAACTGGATTCCGCCTCTGGCTCTCCAAGCAGTCCCTCCCCGTCGAGGCCGCCGTCGTCACCACCACCAGCGCCGCCCAGGGCGCCGCCATCGGCGCCTTCATGGGCACCCTCACCGCCGACGCCTCCTCCACCTTCCCCACCCCTCCTCCCAACGCCTCTCTCAATCCCCAAGCCATGGCGTCTCTTAAACAAGCGCAGGCTCTAGCTGGAGGTCCTTTAATTCAGGCGCGAAACTTTGCTGTGATGACGGGAGTGAACGCTGGGATTTCCTGTGTCTTGAAAAGGATAAGGGGAAAGGAAGATGTCCAGTCTAGCATGGCGGCAGCTTTTGGTTCAGGGGCCTTGTTTTCATTAGTAAGTGGCATGGGTGGACCAAATCAAGCAACAAATGCACTCACTTCTGGACTTTTCTTTGCACTTGTTCAAGGTGGACTTTTCCAGATAGGACAAAAGTTTTCTCAACCACCTGCTGAAGATACTCACTATGCTAAAACAAGACACATGTTGAACAATCTTGGCCTTCAGAGTTACGAAAAGAATTTCAAGAAAGGCTTGTTAACAGACAACACTCTGCCTTTACTCACAGACAGTGCTCTCAGAGATGTGAGGATTCCTCCTGGACCTAGGCTTTTGATTCTTGACCACATCCAGAGGGACGCGGATTTGAAAGATAAGCGAGGAAGCCGAAAGTGA >Glyma06g14420.2 sequence type=CDS gene model=Glyma06g14420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAACAAGCTGGGAAGCAAGGAATTATGGTGGCGTCTCAGAGTCAAAACCCCATTGAGCAAATCCAAGCGCGCTTCAAGGACTTGGAAACTGGATTCCGCCTCTGGCTCTCCAAGCAGTCCCTCCCCGTCGAGGCCGCCGTCGTCACCACCACCAGCGCCGCCCAGGGCGCCGCCATCGGCGCCTTCATGGGCACCCTCACCGCCGACGCCTCCTCCACCTTCCCCACCCCTCCTCCCAACGCCTCTCTCAATCCCCAAGCCATGGCGTCTCTTAAACAAGCGCAGGCTCTAGCTGGAGGTCCTTTAATTCAGGCGCGAAACTTTGCTGTGATGACGGGAGTGAACGCTGGGATTTCCTGTGTCTTGAAAAGGATAAGGGGAAAGGAAGATGTCCAGTCTAGCATGGCGGCAGCTTTTGGTTCAGGGGCCTTGTTTTCATTAGTAAGTGGCATGGGTGGACCAAATCAAGCAACAAATGCACTCACTTCTGGACTTTTCTTTGCACTTGTTCAAGGTGGACTTTTCCAGATAGGACAAAAGTTTTCTCAACCACCTGCTGAAGATACTCACTATGCTAAAACAAGACACATGTTGAACAATCTTGGCCTTCAGAGTTACGAAAAGAATTTCAAGAAAGGCTTGTTAACAGACAACACTCTGCCTTTACTCACAGACAGTGCTCTCAGAGATGTGAGGATTCCTCCTGGACCTAGGCTTTTGATTCTTGACCACATCCAGAGGTAG
>Glyma06g14420.1 sequence type=predicted peptide gene model=Glyma06g14420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQAGKQGIMVASQSQNPIEQIQARFKDLETGFRLWLSKQSLPVEAAVVTTTSAAQGAAIGAFMGTLTADASSTFPTPPPNASLNPQAMASLKQAQALAGGPLIQARNFAVMTGVNAGISCVLKRIRGKEDVQSSMAAAFGSGALFSLVSGMGGPNQATNALTSGLFFALVQGGLFQIGQKFSQPPAEDTHYAKTRHMLNNLGLQSYEKNFKKGLLTDNTLPLLTDSALRDVRIPPGPRLLILDHIQRDADLKDKRGSRK* >Glyma06g14420.2 sequence type=predicted peptide gene model=Glyma06g14420 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEQAGKQGIMVASQSQNPIEQIQARFKDLETGFRLWLSKQSLPVEAAVVTTTSAAQGAAIGAFMGTLTADASSTFPTPPPNASLNPQAMASLKQAQALAGGPLIQARNFAVMTGVNAGISCVLKRIRGKEDVQSSMAAAFGSGALFSLVSGMGGPNQATNALTSGLFFALVQGGLFQIGQKFSQPPAEDTHYAKTRHMLNNLGLQSYEKNFKKGLLTDNTLPLLTDSALRDVRIPPGPRLLILDHIQR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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