Glyma06g14370 - SoyBase

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Report for Sequence Feature Glyma06g14370

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11301517
stop:	11303986
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G18010	AT	Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein \| chr1:6199980-6201359 FORWARD LENGTH=459	SoyBase	E_val: 0	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3098	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR23294	Panther	ET TRANSLATION PRODUCT-RELATED	JGI		ISS
PF05978	PFAM	Ion channel regulatory protein UNC-93	JGI		ISS
UniRef100_G7J9N9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: UNC93-like protein C922.05c n=1 Tax=Medicago truncatula RepID=G7J9N9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KB37	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KB37_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g14370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14370

Paralog	Evidence	Comments
Glyma04g40400	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g138800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g14370

Limit To All Plant Sequences

>Glyma06g14370.1   sequence type=CDS   gene model=Glyma06g14370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTACCCCCGGAAATGATGAACCAGGTACCCAGACCCCACAAAACACAAAAAGTTCTCCCCTTTTCAGATACAATTCACCCTTCATTCAGATCGTTTTAATTGGGTTGGTCTGTTTCTGTTGCCCGGGAATGTTCAACGCCCTCTCCGGCATGGGTGGCGGTGGCCAAGTCAACGCAACCGCCTCCAACAACGCCCTCACCGCCCTCTACACCACCTTCGCCATCTTCGGCATCCTCGGCGGCGGCATCTACAACATTCTCGGACCCCACCTCACCCTCTTCGCAGGTTGCTCCACCTACGTCCTCTACGCAGGCTCCTTCCTCTACTACAACCACTACCAGCACCAGTTCTTCGCCATCGTCGCCGGCGCCATCCTCGGCGTCGGCGCAGGGCTCCTCTGGGCCGCGCAGGGCGCCATCATGACCTCCTACCCTCCGGAGAATCGGAAAGGCACTTACATTTCCATCTTCTGGAGCATCTTCAACATGGGGGGTGTCATCGGTGGCCTAATTCCCTTCATTCTCAATTACAATCGCGGTGACTCAGCTGTCACTGTCAACGACGGAACCTACATAGGATTCATGGTATTTATGGCCGTTGGGGCTGTTCTGTCGTTGACCATTTTACCCGCTAGCAAGGTTGTTCGCGACGATGGGACTCGGTGTACTAAAATGTTGTACTCCAATGCGGCAACTGAATCCGTTGAAATTCTCAAGCTTTTCTACAACTGGAAGATGCTTCTCATTATTCCCGCTGCTTGGTCTAGTAATTTTTTTTATACCTACCAGTTTAACCATGTTAATAAGCCGCAGTTCAATTTGAGGACTAGAGGGTTCAACAATGTGTTCTATTGGGGGGCGCAGATGGTGGGTTCGGTTGGGATTGGGTATGTGATGGATTTCAGCTTTAGGAGCAGGAGGAAGAGAGGGGTTGTGGGGATTGGTGTGGTTGCTCTTCTTGCTTCTGCTATTTGGGGTGGTGCACTTGCGAATCAGATTAAGCATGACCCCGGGGTGATCTTGGATTTCAAGGACTCCGGTTCTCGCTATGCTGGGCCTTTTGTTTTGTATTTCAGTTTTGGGTTGCTTGATGCCGTGTTCCAAAGCATGGTCTATTGGGTTATCGGTGCCCTGGCCAATGATTCTGAGATTCTTAGCAGGTATGCTGGGTTCTATAAAGGCATACAAAGTGCAGGGGCAGCAGTGGCTTGGCAAATTGATAACCATAATGTGTCCGCTATGGCTCAGTTGATTGTGAATTGGGTGCTCACTACTGTGAGCTATCCGTTGTTGTTGATTTTGGTTGTTTTGGCTGTGAAAGAAGGAGACAACAGGGGAGAAGAGGAACCTGTCAAAGAGGTTGCTGGCTTTGCCCACTGA

Predicted protein sequences of Glyma06g14370

Limit To All Plant Sequences

>Glyma06g14370.1   sequence type=predicted peptide   gene model=Glyma06g14370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGTPGNDEPGTQTPQNTKSSPLFRYNSPFIQIVLIGLVCFCCPGMFNALSGMGGGGQVNATASNNALTALYTTFAIFGILGGGIYNILGPHLTLFAGCSTYVLYAGSFLYYNHYQHQFFAIVAGAILGVGAGLLWAAQGAIMTSYPPENRKGTYISIFWSIFNMGGVIGGLIPFILNYNRGDSAVTVNDGTYIGFMVFMAVGAVLSLTILPASKVVRDDGTRCTKMLYSNAATESVEILKLFYNWKMLLIIPAAWSSNFFYTYQFNHVNKPQFNLRTRGFNNVFYWGAQMVGSVGIGYVMDFSFRSRRKRGVVGIGVVALLASAIWGGALANQIKHDPGVILDFKDSGSRYAGPFVLYFSFGLLDAVFQSMVYWVIGALANDSEILSRYAGFYKGIQSAGAAVAWQIDNHNVSAMAQLIVNWVLTTVSYPLLLILVVLAVKEGDNRGEEEPVKEVAGFAH*

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