Glyma06g14300 - SoyBase

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Report for Sequence Feature Glyma06g14300

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11261199
stop:	11265817
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14300

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G54130	AT	Annotation by Michelle Graham. TAIR10: Calcium-binding endonuclease/exonuclease/phosphatase family \| chr5:21962900-21965279 FORWARD LENGTH=436	SoyBase	E_val: 0	ISS
GO:0005509	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calcium ion binding	SoyBase	N/A	ISS
KOG2338	KOG	Transcriptional effector CCR4-related protein	JGI		ISS
PTHR12121	Panther	CARBON CATABOLITE REPRESSOR PROTEIN 4	JGI		ISS
PTHR12121:SF15	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF03372	PFAM	Endonuclease/Exonuclease/phosphatase family	JGI		ISS
UniRef100_G7J9M4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Calcium-binding protein, putative n=1 Tax=Medicago truncatula RepID=G7J9M4_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KB30	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KB30_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g14300

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g14300 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g138200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14300

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g14300

Limit To All Plant Sequences

>Glyma06g14300.2   sequence type=transcript   gene model=Glyma06g14300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CGTTTGCTATTATCGGCTCTGTGTCTCTCTGTCGTCTTTCCTCTCTCTGCTTTCATTTCAATCTCCGTAGGGCCATTTCCATTCAAAAACCCCCTTTTTTTTCATTTCTGAATTTGACCCCTCACACCACCCCACGTTCATCCCCTTTCCCTCCCTCCTTTTCAAAACTCAATCATCACCGTATCCGTTTCATAATTCAGATACCAAACAAACCACTTCCAATTGCGGTTACTTTCTCCCATCAAATCCAATAATAAATATTTGATCATCATCATCATTGATTACACACAATAATTAATATATTAGGGGCAGCATTGGTGGGTTGGGTTTGGACGTATAATGAGAACGGATAGGTGGGCTAAGAGCATGGGAAGAATTTCAAGGATTGGGAGTTTTGCGATTTCTTCTTCCATTAAGGAAAACCAACAACAACCTTGTATTACTTGCACCACTTTTAACATTCTCGCCCCCATATACAAACGCATCAATCATGAGGATCCGAGTTGCCGCGAGAGCGACTACAGAGCTTATTGGTTGGCGAGGAATCACAGGATATTGGATTGGTTATTGAATGAGAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAAGAGACTAGGTGACGCTGGTTATGTCAGTTTCAAGCTTGGAAGGACGAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCAAAAGGAGTACTTTAACATTCTTAATTATAAGGAGTTGCACTTCAATGACTTTGGTGATCGTGTGGCTCAGTTGTTACATGTTGAACTGGCTTCTCCATTTTCACAATGGCGAAACAGTAATATTAGGCAGGAAATTTTGATTGTTAACACTCACCTCCTATTTCCACATGATTCAACTCTATCCCTTGTACGATTGCAGCAGGTTTACAAGATACTTCAATACGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGCTTTGCGGTGACTGGAATGGAAGCAAACGTGGACATGTCTACAAGTTCTTGAGGTCTCAGGGATTTGTATCATCTTATGATACTGCACATCAATACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGCAATCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAACTACTAAAAGCAAGTTGGAGTGAAGCAGTTTTTGGCATGTTCAAGTATCTACTACGGAGAGCTTCATTGACTGAGAGTGATGCATTTTCCTTTCTAAAGGTTGATAACGAAGATTGTATTACCTATTTTGGTTTCTGTGAAGCACTTAAACAGCTCAGTTTAACTGGTCACTGCCATGGATTGAGTGAGGAAGAGATAAAGGACTTGTGGCTCCAAGCAGATGTAGATGGAAAAGGTGTTCTTGATTTTAAAGAATTTCTGCAAATCTGGAGTTCAACAGCTCCAGATAGAGATGACAACAAGAATGGTGATCAGGATGACGGTTCAAATGATGCACAGGAGCAAACAATTGGCTTCAGTGTGAAAAATGCAGTTTTGTTCCCTCCAGAAGTAGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCACGGCTCACTGTTGTATTTTTGCCGATAAGAATGCCATGCTCCCAGTTGATTTGCTAACAATGCTTTTGGCCTCTCTAGCATAGGTTTTAGAATTAAGACTTATGTACATATATTTCACTATAAGAATGGGTGAAGCAGTGGAACGAGTAATGAAAGATGCAACAAGAGTTCTTTTCTGGGGGGTGATTTTAAGGAGCCGGAGCCCTGTGTTGTGATTACTGTACTGCAACATCACACTTGACAAGGTAAGCAAGCATAAGCATACTAAAGAGGACAATTTGAATTCAGTTACCTCTATGGTATCCCTAGCATTGCTGATGATGACATTTGCAGTGAGCAACACTAGTCACCCAGTTTGTTTTCCCCATTAATTATTCTCTAGTGGAAGATTAGACAAAAGGAAGCAAAATAAGAATGATCTGTATAGTTGTGTAATAGGTCCTAGGCGTCAAACCATTTTGTAGCTTGGTAAGATGCACCCTCTAGCTAGAGCTCTCTTAGGGGAGAATTCAGAGACATTGTATCTTGTAGCATATTTTTCTCTTGATACAGTTATGATAAATTCAAAACTGTACGGAGTTCAATAAACTAGTTTCACTTTAAGAACTATACAAGCAAAACTCACTGTCATTGTAACACATAAAAGGTTTCCTATTATTTTAAGCAATGCAATTTTTGTTTTGAA

Coding sequences of Glyma06g14300

Limit To All Plant Sequences

>Glyma06g14300.1   sequence type=CDS   gene model=Glyma06g14300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACGGATAGGTGGGCTAAGAGCATGGGAAGAATTTCAAGGATTGGGAGTTTTGCGATTTCTTCTTCCATTAAGGAAAACCAACAACAACCTTGTATTACTTGCACCACTTTTAACATTCTCGCCCCCATATACAAACGCATCAATCATGAGGATCCGAGTTGCCGCGAGAGCGACTACAGAGCTTATTGGTTGGCGAGGAATCACAGGATATTGGATTGGTTATTGAATGAGAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAAGAGACTAGGTGACGCTGGTTATGTCAGTTTCAAGCTTGGAAGGACGAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCAAAAGGAGTACTTTAACATTCTTAATTATAAGGAGTTGCACTTCAATGACTTTGGTGATCGTGTGGCTCAGTTGTTACATGTTGAACTGGCTTCTCCATTTTCACAATGGCGAAACAGTAATATTAGGCAGGAAATTTTGATTGTTAACACTCACCTCCTATTTCCACATGATTCAACTCTATCCCTTGTACGATTGCAGCAGGTTTACAAGATACTTCAATACGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGCTTTGCGGTGACTGGAATGGAAGCAAACGTGGACATGTCTACAAGTTCTTGAGGTCTCAGGGATTTGTATCATCTTATGATACTGCACATCAATACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGCAATCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAACTACTAAAAGCAAGTTGGAGTGAAGCAGTTTTTGGCATGTTCAAGTATCTACTACGGAGAGCTTCATTGACTGAGAGTGATGCATTTTCCTTTCTAAAGGTTGATAACGAAGATTGTATTACCTATTTTGGTTTCTGTGAAGCACTTAAACAGCTCAGTTTAACTGGTCACTGCCATGGATTGAGTGAGGAAGAGATAAAGGACTTGTGGCTCCAAGCAGATGTAGATGGAAAAGGTGTTCTTGATTTTAAAGAATTTCTGCAGCAAATCTGGAGTTCAACAGCTCCAGATAGAGATGACAACAAGAATGGTGATCAGGATGACGGTTCAAATGATGCACAGGAGCAAACAATTGGCTTCAGTGTGAAAAATGCAGTTTTGTTCCCTCCAGAAGTAGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCACGGCTCACTGTTGTATTTTTGCCGATAAGAATGCCATGCTCCCAGTTGATTTGCTAA

>Glyma06g14300.2   sequence type=CDS   gene model=Glyma06g14300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGAACGGATAGGTGGGCTAAGAGCATGGGAAGAATTTCAAGGATTGGGAGTTTTGCGATTTCTTCTTCCATTAAGGAAAACCAACAACAACCTTGTATTACTTGCACCACTTTTAACATTCTCGCCCCCATATACAAACGCATCAATCATGAGGATCCGAGTTGCCGCGAGAGCGACTACAGAGCTTATTGGTTGGCGAGGAATCACAGGATATTGGATTGGTTATTGAATGAGAGGTCTTCCATTATCTGTCTTCAGGAATTTTGGGTTGGAAATGAAGAGCTTGTTAATTTGTATGAGAAGAGACTAGGTGACGCTGGTTATGTCAGTTTCAAGCTTGGAAGGACGAACAACCGTGGGGACGGTCTTCTAATAGCAGTGCAAAAGGAGTACTTTAACATTCTTAATTATAAGGAGTTGCACTTCAATGACTTTGGTGATCGTGTGGCTCAGTTGTTACATGTTGAACTGGCTTCTCCATTTTCACAATGGCGAAACAGTAATATTAGGCAGGAAATTTTGATTGTTAACACTCACCTCCTATTTCCACATGATTCAACTCTATCCCTTGTACGATTGCAGCAGGTTTACAAGATACTTCAATACGTAGAATCTTATCAGAATGATTTCCAACTCAAGCCAATGCCAATCATGCTTTGCGGTGACTGGAATGGAAGCAAACGTGGACATGTCTACAAGTTCTTGAGGTCTCAGGGATTTGTATCATCTTATGATACTGCACATCAATACACTGATGCAGATGCTCACAAGTGGGTTAGCCACCGCAATCATCGGGGAAATATATGTGCTGTTGATTTTATTTGGCTTCTAAATCCTGACAAATATCGAAAACTACTAAAAGCAAGTTGGAGTGAAGCAGTTTTTGGCATGTTCAAGTATCTACTACGGAGAGCTTCATTGACTGAGAGTGATGCATTTTCCTTTCTAAAGGTTGATAACGAAGATTGTATTACCTATTTTGGTTTCTGTGAAGCACTTAAACAGCTCAGTTTAACTGGTCACTGCCATGGATTGAGTGAGGAAGAGATAAAGGACTTGTGGCTCCAAGCAGATGTAGATGGAAAAGGTGTTCTTGATTTTAAAGAATTTCTGCAAATCTGGAGTTCAACAGCTCCAGATAGAGATGACAACAAGAATGGTGATCAGGATGACGGTTCAAATGATGCACAGGAGCAAACAATTGGCTTCAGTGTGAAAAATGCAGTTTTGTTCCCTCCAGAAGTAGAGAAAGGTAGATGGCCTGAAGACTACTCCCTTTCTGATCATGCACGGCTCACTGTTGTATTTTTGCCGATAAGAATGCCATGCTCCCAGTTGATTTGCTAA

Predicted protein sequences of Glyma06g14300

Limit To All Plant Sequences

>Glyma06g14300.1   sequence type=predicted peptide   gene model=Glyma06g14300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTDRWAKSMGRISRIGSFAISSSIKENQQQPCITCTTFNILAPIYKRINHEDPSCRESDYRAYWLARNHRILDWLLNERSSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQKEYFNILNYKELHFNDFGDRVAQLLHVELASPFSQWRNSNIRQEILIVNTHLLFPHDSTLSLVRLQQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRASLTESDAFSFLKVDNEDCITYFGFCEALKQLSLTGHCHGLSEEEIKDLWLQADVDGKGVLDFKEFLQQIWSSTAPDRDDNKNGDQDDGSNDAQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFLPIRMPCSQLIC*

>Glyma06g14300.2   sequence type=predicted peptide   gene model=Glyma06g14300   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRTDRWAKSMGRISRIGSFAISSSIKENQQQPCITCTTFNILAPIYKRINHEDPSCRESDYRAYWLARNHRILDWLLNERSSIICLQEFWVGNEELVNLYEKRLGDAGYVSFKLGRTNNRGDGLLIAVQKEYFNILNYKELHFNDFGDRVAQLLHVELASPFSQWRNSNIRQEILIVNTHLLFPHDSTLSLVRLQQVYKILQYVESYQNDFQLKPMPIMLCGDWNGSKRGHVYKFLRSQGFVSSYDTAHQYTDADAHKWVSHRNHRGNICAVDFIWLLNPDKYRKLLKASWSEAVFGMFKYLLRRASLTESDAFSFLKVDNEDCITYFGFCEALKQLSLTGHCHGLSEEEIKDLWLQADVDGKGVLDFKEFLQIWSSTAPDRDDNKNGDQDDGSNDAQEQTIGFSVKNAVLFPPEVEKGRWPEDYSLSDHARLTVVFLPIRMPCSQLIC*

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