Glyma06g14150 - SoyBase

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Report for Sequence Feature Glyma06g14150

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11156033
stop:	11161042
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14150

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24470	AT	Annotation by Michelle Graham. TAIR10: pseudo-response regulator 5 \| chr5:8356204-8358873 REVERSE LENGTH=667	SoyBase	E_val: 2.00E-93	ISS
GO:0000160	GO-bp	Annotation by Michelle Graham. GO Biological Process: phosphorelay signal transduction system	SoyBase	N/A	ISS
GO:0005982	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch metabolic process	SoyBase	N/A	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0007623	GO-bp	Annotation by Michelle Graham. GO Biological Process: circadian rhythm	SoyBase	N/A	ISS
GO:0009639	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red or far red light	SoyBase	N/A	ISS
GO:0009640	GO-bp	Annotation by Michelle Graham. GO Biological Process: photomorphogenesis	SoyBase	N/A	ISS
GO:0010114	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to red light	SoyBase	N/A	ISS
GO:0010218	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to far red light	SoyBase	N/A	ISS
GO:0042752	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of circadian rhythm	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0048574	GO-bp	Annotation by Michelle Graham. GO Biological Process: long-day photoperiodism, flowering	SoyBase	N/A	ISS
GO:0051170	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear import	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0000156	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphorelay response regulator activity	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PTHR26402	Panther	RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM	JGI		ISS
PTHR26402:SF303	Panther		JGI		ISS
PF00072	PFAM	Response regulator receiver domain	JGI		ISS
PF06203	PFAM	CCT motif	JGI		ISS
UniRef100_G7J905	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Two-component response regulator-like PRR73 n=2 Tax=Medicago truncatula RepID=G7J905_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339781	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339781 related cluster n=1 Tax=unknown RepID=UPI0002339781	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma06g14150

Locus	Gene Symbol	Protein Name
	PRR39	Ubiquitous, Pseudo response regulator

Expression Patterns of Glyma06g14150

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14150

Paralog	Evidence	Comments
Glyma04g40640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14150 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g136600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14150

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g14150

Limit To All Plant Sequences

>Glyma06g14150.3   sequence type=transcript   gene model=Glyma06g14150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATTTACACAATATTAGAACTTCAAAATAACTTTGTTCATCTGCTTTGAGCAGTGGCTGCTGTTCCTGATGGCTTGAAGGCGTGGGAATTACTGAAGGGAAGACCACACAATGTTGATCTAATTCTGACAGAAGTGGATTTGCCATCCGTATCTGGCTATGCACTTCTCACATTAATTATGGAGCACGAGATTTGCAAAAACATCCCTGTTATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGATTATCTTGTTAAGCCCATTAGAAAAAATGAATTGAGGAACTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACAGGCATTAATGGTCCCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACGAAGCCTGACTGTGAAGCTGAGAGTGGCCCTGTCGATAACATCGATAACATCCAGGAATTTTCTCCGCTGAAATGTGGGGAAGCGTATCCAAGTGGAACAGAGACACAACAGGTTGAAACAAGCATTCGCTTAGGCCAGACATTAATGATGCATGCCAGTCATGCTGGAGGATTAAATGTGAGCATCTGCAAAAATGGTGAGGCAAGCACAACTGATGCTGATCCAGAGCATTTTGGGAATGGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATGAACTCTTCCAAGGAAGCCATTGACTTCATTGGAGCATTTCATACTCATCCAATCTGCACCCTGAAAAATTCCACAGTTAATTGCACGGGCAAGTTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAATCTCGACGCCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGACAACAGATAGCAAATTGTGAAAAAAACATCTCACGCATCGCTACTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAACCTGAACTTGCAACCTCACACTCCCAGCCAGGGCATTCTCTCCCAATTCCTGTAAAGGGTGTAAGGTTCAATGATCTATGCACAACCTATGGTTCTGTATTTCCTTCAGTGTTTCGTGCCCAGTCAGGTTCACCAGCAATGCCAAGTCCAAATTCAGTTATGCTCCTTGAACCAAACTTTCAAGTCAATGCATTTTATCAGTCAAATATGAAAGAGAGTAGTTCAGAGCAGCTTTATGAACCTGGTGGTCCAAATGGAAACACCACCCAAAACCACATTGTGTACACACAGGAGCACAAATCAGAAAATGCAGAAGATCAAGGACATATCTCTCCTACCACTGATCAAAGTGTTTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTGTCTGGGCAGCTTCAGAGGGCAAGCATAAAGACCTCACAAGCAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTGCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAGATTGCAAAGAATATGATCATTCACATATTTCTGACACACTGGAGAGGAGAGCATGAATTCCTTAGTATATAGTTGCTTCAAAATTTTGTTTTCCCGAATCCTTAAATACCAGAAGCACTTGATCTGTATATGCTTTCTAAAACCGTTTTTCTCATTTGCCCTTTCTGTAGATCGTGATATATAATATACCTGATGTATATCATTGTAATTTTACAGTCTTTAGGGATCTTCGTGCATCATTATTTATTTATTTATAAGGAGTTGTTTACTTACAGGGACTCACTGATTTTTTATCTTGTAAGAGTTTTTACTTACTACAATAGCATTATAATTTTTTTATAATAACTACCACTACCAGTTAACATTTATATTTTATTCAAAACTTGCACCTTTTTTTTTTATTTAAAAAATCGGTTTACCTTAAGGTGGTTGCAGGTTTAGCAAGCAAACTTTTCTTGAAGAGTGCACTT

Coding sequences of Glyma06g14150

Limit To All Plant Sequences

>Glyma06g14150.2   sequence type=CDS   gene model=Glyma06g14150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCAGAGGTGGTGATGAGTGGAGAGAAGAACTCACTGGGAGTGGAGGGGCTTGCGAAGGAAGATAGTGGTGGAAGTGGGAGCAAGGGTGGTGCTGCTCATTTGAAGGGCTTTATGAGGTGGGAGAAGTTCTTGCCCAAGATGATTTTGAGGGTGCTATTGGTTGAAGCAGATGATTCCACCAGACAGATTATTGCCGCGCTTCTCAGAAAATGCAGCTACAAAGTGGCTGCTGTTCCTGATGGCTTGAAGGCGTGGGAATTACTGAAGGGAAGACCACACAATGTTGATCTAATTCTGACAGAAGTGGATTTGCCATCCGTATCTGGCTATGCACTTCTCACATTAATTATGGAGCACGAGATTTGCAAAAACATCCCTGTTATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGATTATCTTGTTAAGCCCATTAGAAAAAATGAATTGAGGAACTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACAGGCATTAATGGTCCCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACGAAGCCTGACTGTGAAGCTGAGAGTGGCCCTGTCGATAACATCGATAACATCCAGGAATTTTCTCCGCTGAAATGTGGGGAAGCGTATCCAAGTGGAACAGAGACACAACAGGTTGAAACAAGCATTCGCTTAGGCCAGACATTAATGATGCATGCCAGTCATGCTGGAGGATTAAATGTGAGCATCTGCAAAAATGGTGAGGCAAGCACAACTGATGCTGATCCAGAGCATTTTGGGAATGGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATGAACTCTTCCAAGGAAGCCATTGACTTCATTGGAGCATTTCATACTCATCCAATCTGCACCCTGAAAAATTCCACAGTTAATTGCACGGGCAAGTTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAATCTCGACGCCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGACAACAGATAGCAAATTGTGAAAAAAACATCTCACGCATCGCTACTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAACCTGAACTTGCAACCTCACACTCCCAGCCAGGGCATTCTCTCCCAATTCCTGTAAAGGGTGTAAGGTTCAATGATCTATGCACAACCTATGGTTCTGTATTTCCTTCAGTGTTTCGTGCCCAGTCAGGTTCACCAGCAATGCCAAGTCCAAATTCAGTTATGCTCCTTGAACCAAACTTTCAAGTCAATGCATTTTATCAGTCAAATATGAAAGAGAGTAGTTCAGAGCAGCTTTATGAACCTGGTGGTCCAAATGGAAACACCACCCAAAACCACATTGTGTACACACAGGAGCACAAATCAGAAAATGCAGAAGATCAAGGACATATCTCTCCTACCACTGATCAAAGTGTTTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTGTCTGGGCAGCTTCAGAGGGCAAGCATAAAGACCTCACAAGCAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTGCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAGATTGCAAAGAATATGATCATTCACATATTTCTGACACACTGGAGAGGAGAGCATGA

>Glyma06g14150.3   sequence type=CDS   gene model=Glyma06g14150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACGAGATTTGCAAAAACATCCCTGTTATAATGATGTCTTCCCAAGATTCAATTAGCACAGTATACAAATGCATGTTGAGAGGTGCTGCTGATTATCTTGTTAAGCCCATTAGAAAAAATGAATTGAGGAACTTGTGGCAACATGTTTGGAGAAGACAATCATCAACCACAGGCATTAATGGTCCCCAAGATGAGAGTGTTGCACAACAGAAGGTTGAAGCCACTGCAGAAAATAATGCTGCTAGTAATCGTTCAAGTGGTGATGCTGCTTGCATTCAGAGAAATATGGAATTAATTGAGAAAGGAAGTGATGCACAGAGCTCTTGTACGAAGCCTGACTGTGAAGCTGAGAGTGGCCCTGTCGATAACATCGATAACATCCAGGAATTTTCTCCGCTGAAATGTGGGGAAGCGTATCCAAGTGGAACAGAGACACAACAGGTTGAAACAAGCATTCGCTTAGGCCAGACATTAATGATGCATGCCAGTCATGCTGGAGGATTAAATGTGAGCATCTGCAAAAATGGTGAGGCAAGCACAACTGATGCTGATCCAGAGCATTTTGGGAATGGCATCAGTGGTGAGGCTCATGACAATCACTATGTTCAAATGAACTCTTCCAAGGAAGCCATTGACTTCATTGGAGCATTTCATACTCATCCAATCTGCACCCTGAAAAATTCCACAGTTAATTGCACGGGCAAGTTTGACCTTTCTCCTCAATTGGATCTTTCTCTGAGAAGATCTCGTCCCAGCAGCTTTGAGAATGAACTCACTGAAGAAAGGCACACCCTGATGCATTCTAATGCTTCAGCTTTCAAGCGGTATACTAACAGGCAATTGCAAATCTCGACGCCTGCAGTGTTAATTAACTTCTCTGATCAACAAAGACAACAGATAGCAAATTGTGAAAAAAACATCTCACGCATCGCTACTGGCTGCAACTCAGATAGTTCAACACCTAGTATGCAAAGATGTATCGTGTCTCCAACTACAGTCCAATCAAAAGAACCTGAACTTGCAACCTCACACTCCCAGCCAGGGCATTCTCTCCCAATTCCTGTAAAGGGTGTAAGGTTCAATGATCTATGCACAACCTATGGTTCTGTATTTCCTTCAGTGTTTCGTGCCCAGTCAGGTTCACCAGCAATGCCAAGTCCAAATTCAGTTATGCTCCTTGAACCAAACTTTCAAGTCAATGCATTTTATCAGTCAAATATGAAAGAGAGTAGTTCAGAGCAGCTTTATGAACCTGGTGGTCCAAATGGAAACACCACCCAAAACCACATTGTGTACACACAGGAGCACAAATCAGAAAATGCAGAAGATCAAGGACATATCTCTCCTACCACTGATCAAAGTGTTTCAAGTAGTTTCTGCAATGGAAATGCAAGCCATCTTAACAGCATTGGTTATGGAAGCAACTGTGGAAGTAGCAGCAATGTTGATCAAGTTAACACTGTCTGGGCAGCTTCAGAGGGCAAGCATAAAGACCTCACAAGCAATGCAAACTCTCATCGATCTATCCAAAGAGAAGCAGCTCTAAACAAATTCCGCTTGAAAAGGAAAGAGAGATGCTATGAGAAGAAGGTTCGATATGAGAGCAGAAAGAAACTAGCAGAGCAGCGTCCCAGAGTGAAAGGACAATTTGTGCGTCAAGTGCATCCTGATCCTCTTGTTGCAGAAAAAGATTGCAAAGAATATGATCATTCACATATTTCTGACACACTGGAGAGGAGAGCATGA

Predicted protein sequences of Glyma06g14150

Limit To All Plant Sequences

>Glyma06g14150.2   sequence type=predicted peptide   gene model=Glyma06g14150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEVVMSGEKNSLGVEGLAKEDSGGSGSKGGAAHLKGFMRWEKFLPKMILRVLLVEADDSTRQIIAALLRKCSYKVAAVPDGLKAWELLKGRPHNVDLILTEVDLPSVSGYALLTLIMEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDCEAESGPVDNIDNIQEFSPLKCGEAYPSGTETQQVETSIRLGQTLMMHASHAGGLNVSICKNGEASTTDADPEHFGNGISGEAHDNHYVQMNSSKEAIDFIGAFHTHPICTLKNSTVNCTGKFDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQISTPAVLINFSDQQRQQIANCEKNISRIATGCNSDSSTPSMQRCIVSPTTVQSKEPELATSHSQPGHSLPIPVKGVRFNDLCTTYGSVFPSVFRAQSGSPAMPSPNSVMLLEPNFQVNAFYQSNMKESSSEQLYEPGGPNGNTTQNHIVYTQEHKSENAEDQGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQVNTVWAASEGKHKDLTSNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAEKDCKEYDHSHISDTLERRA*

>Glyma06g14150.3   sequence type=predicted peptide   gene model=Glyma06g14150   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHEICKNIPVIMMSSQDSISTVYKCMLRGAADYLVKPIRKNELRNLWQHVWRRQSSTTGINGPQDESVAQQKVEATAENNAASNRSSGDAACIQRNMELIEKGSDAQSSCTKPDCEAESGPVDNIDNIQEFSPLKCGEAYPSGTETQQVETSIRLGQTLMMHASHAGGLNVSICKNGEASTTDADPEHFGNGISGEAHDNHYVQMNSSKEAIDFIGAFHTHPICTLKNSTVNCTGKFDLSPQLDLSLRRSRPSSFENELTEERHTLMHSNASAFKRYTNRQLQISTPAVLINFSDQQRQQIANCEKNISRIATGCNSDSSTPSMQRCIVSPTTVQSKEPELATSHSQPGHSLPIPVKGVRFNDLCTTYGSVFPSVFRAQSGSPAMPSPNSVMLLEPNFQVNAFYQSNMKESSSEQLYEPGGPNGNTTQNHIVYTQEHKSENAEDQGHISPTTDQSVSSSFCNGNASHLNSIGYGSNCGSSSNVDQVNTVWAASEGKHKDLTSNANSHRSIQREAALNKFRLKRKERCYEKKVRYESRKKLAEQRPRVKGQFVRQVHPDPLVAEKDCKEYDHSHISDTLERRA*

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