Glyma06g14140 - SoyBase

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Report for Sequence Feature Glyma06g14140

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11148578
stop:	11150866
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G24490	AT	Annotation by Michelle Graham. TAIR10: 30S ribosomal protein, putative \| chr5:8365690-8367178 FORWARD LENGTH=308	SoyBase	E_val: 5.00E-123	ISS
GO:0006412	GO-bp	Annotation by Michelle Graham. GO Biological Process: translation	SoyBase	N/A	ISS
GO:0044238	GO-bp	Annotation by Michelle Graham. GO Biological Process: primary metabolic process	SoyBase	N/A	ISS
GO:0005840	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: ribosome	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009534	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003735	GO-mf	Annotation by Michelle Graham. GO Molecular Function: structural constituent of ribosome	SoyBase	N/A	ISS
PF02482	PFAM	Sigma 54 modulation protein / S30EA ribosomal protein	JGI		ISS
UniRef100_B9SEK8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plastid-specific 30S ribosomal protein 1, chloroplast, putative n=1 Tax=Ricinus communis RepID=B9SEK8_RICCO	SoyBase	E_val: 6.00E-134	ISS
UniRef100_I1KB15	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KB15_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g14140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14140

Paralog	Evidence	Comments
Glyma04g40650	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g136500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g14140

Limit To All Plant Sequences

>Glyma06g14140.2   sequence type=transcript   gene model=Glyma06g14140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATAGATAAAATTGGCCACGTGTGTCACTTGAATATTCATCGTCATCCGACAAGAAGAAAGAGACGCCCCATATCCATTGCTGTCACTCTCACACAACACTACACTATACCTTCCTTCCCCTTCTTCCATCTTCATCCACTTTCTATTCAATGGCTACTCTCTTTAACTTCAATTCCACCCTTCGCCCCTCTTGTTATCTTCCCTTATCACCCTCCTCGTCATATCCCCACTTCTCTAATACACTCTCCACAACTTTCTTGGGCCACATCGTAACCCTCAAATATGCCGCCACTTCCACAAGCAACCGTGGCCGTTCTCTCTCCACTCGCATGTCATGGGACGGTCCTCTCTCTTCCGTCAAATTGATCATTCAGGGTAAAAATCTCGAGCTCACTGATGCAGTGAAGCAGCACGTGGAAGACAAAGTGGGGAAAGCGGTTCAGAAGCACAGTCACCTAGTGAGAGAGGTTGATGTGAGGCTTTCTATTCGAGGAGGAGGTGAATTTGGGCGAGGACCCAGAACTCGTAGATGTGAGGTGACTTTGTTCACGAAAAGGCATGGAGTGGTGCGGGCTGAGGAGGATGCTGAAAGCACCTATGGAAGTATAGATTTGGTGTCATCAATCATTCAGAGGAAGTTGAGGAAAATAAAGGAAAAGGTGTCAGATCATGGTCGCCACATGAAGGGGTTCAATAGGCTAAAGGTTAGGGAGCCCGTGGAGCAATTACCTATGGAAGAGGATGAAATATTATCCCCACGGGAGGAGGAAGAATCAATTGATGAGGTTGGTAGTTGGTACTTAACAGTTATCGGTCTTGTTTGGTTTCATTTTATCTCTTCTTCGTGTCATGCCAATTTCCTTCATTTTCTTTATTATGCTCGCTTTGATTTCTGATTTTGCACATCTTGAATTGGGTTCATACATGTATACTTGTCAACATTTGTATTCATTGTTAACCATGTGGAATAACATTGTGTGATCCATGTAGCCGGTCTTACCTAGTGGGATAAGGTTTTGTTGTATAGAAGTGTGAAAGTTCTAAATACACAGGATAGAGAATTTGATGGGTGG

Coding sequences of Glyma06g14140

Limit To All Plant Sequences

>Glyma06g14140.1   sequence type=CDS   gene model=Glyma06g14140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTCTCTTTAACTTCAATTCCACCCTTCGCCCCTCTTGTTATCTTCCCTTATCACCCTCCTCGTCATATCCCCACTTCTCTAATACACTCTCCACAACTTTCTTGGGCCACATCGTAACCCTCAAATATGCCGCCACTTCCACAAGCAACCGTGGCCGTTCTCTCTCCACTCGCATGTCATGGGACGGTCCTCTCTCTTCCGTCAAATTGATCATTCAGGGTAAAAATCTCGAGCTCACTGATGCAGTGAAGCAGCACGTGGAAGACAAAGTGGGGAAAGCGGTTCAGAAGCACAGTCACCTAGTGAGAGAGGTTGATGTGAGGCTTTCTATTCGAGGAGGAGGTGAATTTGGGCGAGGACCCAGAACTCGTAGATGTGAGGTGACTTTGTTCACGAAAAGGCATGGAGTGGTGCGGGCTGAGGAGGATGCTGAAAGCACCTATGGAAGTATAGATTTGGTGTCATCAATCATTCAGAGGAAGTTGAGGAAAATAAAGGAAAAGGTGTCAGATCATGGTCGCCACATGAAGGGGTTCAATAGGCTAAAGGTTAGGGAGCCCGTGGAGCAATTACCTATGGAAGAGGATGAAATATTATCCCCACGGGAGGAGGAAGAATCAATTGATGAGGTTGTTCGCACAAAGTACTTTGACATGCCACCATTGACTGTGGCTGAAGCAATTGAACAGCTTGAAAATGTTGATCATGACTTTTATGGTTTTCGAAATGAAGAAACTGGGGAAATTAATATTGTGTACAAACGAAAAGAAGGAGGATATGGACTCATTATACCTAAAGGTGATGGTGAAGCAGAGAAATTGGAGTCTGTAGTGCTTGAACCAGCTATAGAATCCTCTCTGAAAGAATGA

>Glyma06g14140.2   sequence type=CDS   gene model=Glyma06g14140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACTCTCTTTAACTTCAATTCCACCCTTCGCCCCTCTTGTTATCTTCCCTTATCACCCTCCTCGTCATATCCCCACTTCTCTAATACACTCTCCACAACTTTCTTGGGCCACATCGTAACCCTCAAATATGCCGCCACTTCCACAAGCAACCGTGGCCGTTCTCTCTCCACTCGCATGTCATGGGACGGTCCTCTCTCTTCCGTCAAATTGATCATTCAGGGTAAAAATCTCGAGCTCACTGATGCAGTGAAGCAGCACGTGGAAGACAAAGTGGGGAAAGCGGTTCAGAAGCACAGTCACCTAGTGAGAGAGGTTGATGTGAGGCTTTCTATTCGAGGAGGAGGTGAATTTGGGCGAGGACCCAGAACTCGTAGATGTGAGGTGACTTTGTTCACGAAAAGGCATGGAGTGGTGCGGGCTGAGGAGGATGCTGAAAGCACCTATGGAAGTATAGATTTGGTGTCATCAATCATTCAGAGGAAGTTGAGGAAAATAAAGGAAAAGGTGTCAGATCATGGTCGCCACATGAAGGGGTTCAATAGGCTAAAGGTTAGGGAGCCCGTGGAGCAATTACCTATGGAAGAGGATGAAATATTATCCCCACGGGAGGAGGAAGAATCAATTGATGAGGTTGGTAGTTGGTACTTAACAGTTATCGGTCTTGTTTGGTTTCATTTTATCTCTTCTTCGTGTCATGCCAATTTCCTTCATTTTCTTTATTATGCTCGCTTTGATTTCTGA

Predicted protein sequences of Glyma06g14140

Limit To All Plant Sequences

>Glyma06g14140.1   sequence type=predicted peptide   gene model=Glyma06g14140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLFNFNSTLRPSCYLPLSPSSSYPHFSNTLSTTFLGHIVTLKYAATSTSNRGRSLSTRMSWDGPLSSVKLIIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVEQLPMEEDEILSPREEEESIDEVVRTKYFDMPPLTVAEAIEQLENVDHDFYGFRNEETGEINIVYKRKEGGYGLIIPKGDGEAEKLESVVLEPAIESSLKE*

>Glyma06g14140.2   sequence type=predicted peptide   gene model=Glyma06g14140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATLFNFNSTLRPSCYLPLSPSSSYPHFSNTLSTTFLGHIVTLKYAATSTSNRGRSLSTRMSWDGPLSSVKLIIQGKNLELTDAVKQHVEDKVGKAVQKHSHLVREVDVRLSIRGGGEFGRGPRTRRCEVTLFTKRHGVVRAEEDAESTYGSIDLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVEQLPMEEDEILSPREEEESIDEVGSWYLTVIGLVWFHFISSSCHANFLHFLYYARFDF*

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