Glyma06g14060 - SoyBase

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Report for Sequence Feature Glyma06g14060

Feature Type:	gene_model
Chromosome:	Gm06
Start:	11107150
stop:	11112278
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g14060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G49430	AT	Annotation by Michelle Graham. TAIR10: SER/ARG-rich protein 34A \| chr3:18332668-18334617 FORWARD LENGTH=297	SoyBase	E_val: 1.00E-114	ISS
GO:0008380	GO-bp	Annotation by Michelle Graham. GO Biological Process: RNA splicing	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
KOG0105	KOG	Alternative splicing factor ASF/SF2 (RRM superfamily)	JGI		ISS
PTHR10548	Panther	ARGININE/SERINE-RICH SPLICING FACTOR	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9S1M8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arginine/serine-rich splicing factor, putative n=1 Tax=Ricinus communis RepID=B9S1M8_RICCO	SoyBase	E_val: 6.00E-117	ISS
UniRef100_I1KB05	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KB05_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g14060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g14060

Paralog	Evidence	Comments
Glyma04g40740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g14060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g135500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g14060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g14060

Limit To All Plant Sequences

>Glyma06g14060.2   sequence type=transcript   gene model=Glyma06g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAACCCATTTTGGGTCCATAAATTCGGTACTCAACCCTACCACTTACACTCTCTATTTTCTCGATTTCGGAAGGGTCGTGTTCTCTCTCTGCTTCAGCTTCGGCTTCGAGAAGGGTCGATTGGGTCCCCAAGCTGTTTCTTCTCTGTTTCTGACAAACTTTATAACCCTTATCAAACATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGCAGCGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAGATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTGATATTCTCCCATTCTGGTGGGCAGTATCGGAATTATATTTGAGTTGGACTAAATTGTTTTAGGGAAAATTATTGTTGTACCTAGGCTGTTTCTTGGTAAATTGTTACCAGTTTGGTGATTGTGTTGTTTCTTTTAAAACTAAAATGTTGGACATTAGCCTAGCGCTTTGTACCTTTTAACTAGTTTCTATGACAATTATTAGCGCTTTTAATTTGTTTTTTAATTTCGAAGTTATAAATCCATCAAAAACTCAACGTGTTCTTTAAAGTAAGTTAAAAAATCAACGTGTTCTTTTAAGTAAA

>Glyma06g14060.3   sequence type=transcript   gene model=Glyma06g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAACCCATTTTGGGTCCATAAATTCGGTACTCAACCCTACCACTTACACTCTCTATTTTCTCGATTTCGGAAGGGTCGTGTTCTCTCTCTGCTTCAGCTTCGGCTTCGAGAAGGGTCGATTGGGTCCCCAAGCTGTTTCTTCTCTGTTTCTGACAAACTTTATAACCCTTATCAAACATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGCAGCGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTGATATTCTCCCATTCTGGTGGGCAGTATCGGAATTATATTTGAGTTGGACTAAATTGTTTTAGGGAAAATTATTGTTGTACCTAGGCTGTTTCTTGGTAAATTGTTACCAGTTTGGTGATTGTGTTGTTTCTTTTAAAACTAAAATGTTGGACATTAGCCTAGCGCTTTGTACCTTTTAACTAGTTTCTATGACAATTATTAGCGCTTTTAATTTGTTTTTTAATTTCGAAGTTATAAATCCATCAAAAACTCAACGTGTTCTTTAAAGTAAGTTAAAAAATCAACGTGTTCTTTTAAGTAAA

Coding sequences of Glyma06g14060

Limit To All Plant Sequences

>Glyma06g14060.1   sequence type=CDS   gene model=Glyma06g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGCAGCGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAGATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGGTATACAAAACATACTATGTTGAATATATTGTTTGTAATACTTTTAATATTGCACCTGAATTGTTCATTGAATTATGCAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCAGGTAGTGGTTGAGTTTCTGAAAAAGCCTGTGGTTCTCTGGTGA

>Glyma06g14060.2   sequence type=CDS   gene model=Glyma06g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGCAGCGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGTAGATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCAGGTAGTGGTTGA

>Glyma06g14060.3   sequence type=CDS   gene model=Glyma06g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTGGTCGCTTTTCTCGCACAATTTATGTTGGCAACCTGCCCTCTGATATAAGAGAGTCAGAAATTGAAGATCTATTCTACAAGTATGGCCGTATAATGGATATTGAATTGAAGGTTCCTCCCCGCCCTCCATGTTATTGCTTTGTTGAGTTTGATAATGCTCGAGATGCCGAAGATGCAATTCGGGGTCGAGATGGATACAACTTTGATGGTTGTCGGTTAAGAGTGGAGCTTGCTCATGGTGGTAGAGGGCCATCATCAAGTGATCGACGTGGATATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGGTGGCAGCGGCGCAGGCGGGGGTCGTTTTGGCATCTCACGCCATTCTGAATTTCGAGTTATTGTTCGCGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGGATCATATGCGAAAAGCTGGTGATGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGGGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCTATTCGGAAACTAGATGACACTGAGTTTAGAAATCCTTGGGCGAGAGCTTATATTCGGGTGAGGAAGTATGAGAGTAGTCGTTCTAGGAGCCACAGCAGAAGTCCCAGCAGGAGCAGAAGTCCAAAAAGAGTTAGAAGATCTTTGGAGCGTTCTGTGTCTAGGTCTCGATCTAGATCGCGATCAGTATCACCAATCAAATCTTCTAGGCCAAGATCACGTTCACGATCTGGATCTCCTCGTCAGGTGCTGTCAGGTAGTGGTTGA

Predicted protein sequences of Glyma06g14060

Limit To All Plant Sequences

>Glyma06g14060.1   sequence type=predicted peptide   gene model=Glyma06g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGSGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSHSRSPSRSRSPKRVRSRSLERSVSRSRSRSRSVSPIKSSRYTKHTMLNILFVILLILHLNCSLNYAGQDHVHDLDLLVRCCQVVVEFLKKPVVLW*

>Glyma06g14060.2   sequence type=predicted peptide   gene model=Glyma06g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGSGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSHSRSPSRSRSPKRVRSRSLERSVSRSRSRSRSVSPIKSSRPRSRSRSGSPRQVLSGSG*

>Glyma06g14060.3   sequence type=predicted peptide   gene model=Glyma06g14060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSGRFSRTIYVGNLPSDIRESEIEDLFYKYGRIMDIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRGYGGGGGGGGGGGGSGAGGGRFGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKYAIRKLDDTEFRNPWARAYIRVRKYESSRSRSHSRSPSRSRSPKRVRRSLERSVSRSRSRSRSVSPIKSSRPRSRSRSGSPRQVLSGSG*

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