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Integrating Genetics and Genomics to Advance Soybean Research




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Report for Sequence Feature Glyma06g14000

Feature Type:gene_model
Chromosome:Gm06
Start:11057249
stop:11062435
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27670AT Annotation by Michelle Graham. TAIR10: heat shock protein 21 | chr4:13819048-13819895 REVERSE LENGTH=227 SoyBaseE_val: 6.00E-89ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
KOG0710 KOG Molecular chaperone (small heat-shock protein Hsp26/Hsp42) JGI ISS
PTHR11527Panther SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY JGI ISS
PTHR11527:SF18Panther HEAT SHOCK PROTEIN 26 JGI ISS
PF00011PFAM Hsp20/alpha crystallin family JGI ISS
UniRef100_A9QVH3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Heat shock protein n=1 Tax=Ammopiptanthus mongolicus RepID=A9QVH3_9FABA SoyBaseE_val: 8.00E-126ISS
UniRef100_I1KAZ9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAZ9_SOYBN SoyBaseE_val: 6.00E-171ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g14000 not represented in the dataset

Glyma06g14000 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma04g40790 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g134900 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g14000.1   sequence type=CDS   gene model=Glyma06g14000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCAAGCACTATCAACTTCATTAGCACTACTATCACAAAAAACAGGGTACTCTGTCAATCCACAGAACAATGCTATTGCACCCTGCATGGCCTCTTTTCCGTCGAGGAAGGAGTTTCCAAGGCTAGTAAGGGTGAGAGCTCAGGCTTCTGGTGATAACAAAGACAACTCTGTGGAAGTACAACATGTTAACAAGGGTGACCATGGAACCGCGGTTGAGAAGAAGCCACGCAGAACTTCCATGGACATTTCACCATTTGGTCTCTTGGACCCGTGGTCACCCATGAGGAGCATGCGCCAGATTTTGGACACGATGGACCGAATTTTCGAAGATACCATGACATTCCCAGGAAGAAACGTGGGAGCAGGGGAGATCCGTGCCCCTTGGGACATCAAAGATGAAGAACATGAAATCAGAATGAGGTTTGACATGCCGGGTCTTGCCAAGGAAGATGTTAAGGTATCAGTGGAAGATGATGTGCTTGTTATAAAAGGTGGCCACAAGAGTGAACAAGAACATAGTGGAGATGATTCTTGGTCTAGCAGGAGCTATAATTCCTATGATACCCGCTTGAAGCTTCCGGATAACTGCGAGAAGGACAAGATTAAGGCAGAGTTGAAAAATGGTGTGCTTTATATCACCATTCCTAAGACCAAGGTTGAACGCAAGGTTATTGATGTCCAAGTTCAGTGA

>Glyma06g14000.1   sequence type=predicted peptide   gene model=Glyma06g14000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQALSTSLALLSQKTGYSVNPQNNAIAPCMASFPSRKEFPRLVRVRAQASGDNKDNSVEVQHVNKGDHGTAVEKKPRRTSMDISPFGLLDPWSPMRSMRQILDTMDRIFEDTMTFPGRNVGAGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDVLVIKGGHKSEQEHSGDDSWSSRSYNSYDTRLKLPDNCEKDKIKAELKNGVLYITIPKTKVERKVIDVQVQ*







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