Glyma06g13800 - SoyBase

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Report for Sequence Feature Glyma06g13800

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10910887
stop:	10915947
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27680	AT	Annotation by Michelle Graham. TAIR10: P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr4:13821263-13823083 FORWARD LENGTH=398	SoyBase	E_val: 0	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0737	KOG	AAA+-type ATPase	JGI		ISS
PTHR23074	Panther	AAA ATPASE	JGI		ISS
PTHR23074:SF20	Panther	AAA-FAMILY ATPASE	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
UniRef100_I1KAX2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAX2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9T090	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26S proteasome regulatory particle chain RPT6-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9T090_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g13800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13800

Paralog	Evidence	Comments
Glyma04g41040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g132800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g13800

Limit To All Plant Sequences

>Glyma06g13800.2   sequence type=transcript   gene model=Glyma06g13800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCCCAAGCGTTGGGATTCTTAACCCTTATTTCTTCAGAACCCTCGCTCCTCGCCAGAAATTGTATTGCAGAGGAAAGACCGAGAAAAAAGAAGAAGGAATTTTGATGGTAAAGTAATATTCTAATTTCCAAAATTCGATTTTGTTGCCGAAGGAAGAAAAGAAGGAAATGGGAGGTTCATCGGATACGAAGCTCCTGCAAGACCTGTTGTTGTACGCAGCGAGCGCAGCGCTGAGTTGCTTGGTACTATTCGCGGGTTTGAGACACCTGGACCCTAATCGCGAAGCATCGAAGAAGGCTCTCGAGCACAAGAAAGAGATTGCAAAGCGTCTTGGTCGTCCCCTTATTCAGACTAACCCTTACGAGGATGTAATAGCCTGTGACGTTATAAATCCTGATCACATCAATGTGGAGTTCAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGACTTGTTTTCACATGGCAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCGCCCGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCCAGAGCAGTTTTTATTAACGTGAGAATATCAAACCTGATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTTGCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTGGAACAGATCACGAGGCTATGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGATTTACAACAGATCAGAATGCTCAAGTTATGGTTCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGGCTGAAATATTGAAGGTTGTCTTAAAGGGTGAGAGGGTTGAAGACAACATAGACTTTGGTCATATAGCTGGTTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCATGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAAAGAAGACAAAGGTTGCTGCTAGTGAATACGGTGGATTCAGCCTTCAGTCACCTTCAAGATGGACAGTGCCTGGTGAGTCAGAGTAAAGCTTAAGACTCATCAAGATGATGCAGTGTGTCAAGTTGCCAACAGCCATCAATCATTGAGACCTCGGAGAAATAACTGCCATTGGATTGGGTTCGGCAGGGTTATAATTTTAAGCAGTGGGTCAGTTATCATCCTTATGTTTTTGTTGTCTTTATGATCCACCCGTATATGCTGATGATTAAATCAAACCCTTGAAAGTTGCGAGTTCTTCCCATCACATTCATTCATTATGTAGTTAGGACCACAAATTTGTTGTTTTTCCACTTTTAATGTTAAGAGGAAAAAAAAAAACTAGTGTCAAATGCCGTATAATTTAAGATAACGGAGTATTTAAGTATCAATTGTATCTCAAAGTAATTAATCTTTGGCTTTTGACGAGGAATAGCTAGATTTACCAAAAAAAAAAACAATGTGTTGGCGTACATGATTTATCACAATCCGAGAAGGAACATCTCTCTTTCTTTTCACAGATTTAGGTTTTCGGAAATGGAAGTGGCTATTTATTTCTGTTTGGAAATATCTCCGTCCTTGTCAAAGACCTGGGAGTCTAGTGGAGAGAAACACACAGGTTATTGGACACAAATGAAAAATAATATAGTACTGAAAGAGGCATGACAACTCTGTTTTTC

>Glyma06g13800.3   sequence type=transcript   gene model=Glyma06g13800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AACCCCAAGCGTTGGGATTCTTAACCCTTATTTCTTCAGAACCCTCGCTCCTCGCCAGAAATTGTATTGCAGAGGAAAGACCGAGAAAAAAGAAGAAGGAATTTTGATGGTAAAGTAATATTCTAATTTCCAAAATTCGATTTTGTTGCCGAAGGAAGAAAAGAAGGAAATGGGAGGTTCATCGGATACGAAGCTCCTGCAAGACCTGTTGTTGTACGCAGCGAGCGCAGCGCTGAGTTGCTTGGTACTATTCGCGGGTTTGAGACACCTGGACCCTAATCGCGAAGCATCGAAGAAGGCTCTCGAGCACAAGAAAGAGATTGCAAAGCGTCTTGGTCGTCCCCTTATTCAGACTAACCCTTACGAGGATGTAATAGCCTGTGACGTTATAAATCCTGATCACATCAATGTGGAGTTCAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGACTTGTTTTCACATGGCAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCGCCCGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCCAGAGCAGTTTTTATTAACGTGAGAATATCAAACCTGATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTTGCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTGGAACAGATCACGAGGCTATGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGATTTACAACAGATCAGAATGCTCAAGTTATGGTTCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGGCTGAAATATTGAAGGTTGTCTTAAAGGGTGAGAGGGTTGAAGACAACATAGACTTTGGTCATATAGCTGGTTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCATGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAAAGAAGACAAAGGTTGCTGCTAGTGAATACGGTGGATTCAGCCTTCAGTCACCTTCAAGATGGACAGTGCCTGAGTAAAGCTTAAGACTCATCAAGATGATGCAGTGTGTCAAGTTGCCAACAGCCATCAATCATTGAGACCTCGGAGAAATAACTGCCATTGGATTGGGTTCGGCAGGGTTATAATTTTAAGCAGTGGGTCAGTTATCATCCTTATGTTTTTGTTGTCTTTATGATCCACCCGTATATGCTGATGATTAAATCAAACCCTTGAAAGTTGCGAGTTCTTCCCATCACATTCATTCATTATGTAGTTAGGACCACAAATTTGTTGTTTTTCCACTTTTAATGTTAAGAGGAAAAAAAAAAACTAGTGTCAAATGCCGTATAATTTAAGATAACGGAGTATTTAAGTATCAATTGTATCTCAAAGTAATTAATCTTTGGCTTTTGACGAGGAATAGCTAGATTTACCAAAAAAAAAAACAATGTGTTGGCGTACATGATTTATCACAATCCGAGAAGGAACATCTCTCTTTCTTTTCACAGATTTAGGTTTTCGGAAATGGAAGTGGCTATTTATTTCTGTTTGGAAATATCTCCGTCCTTGTCAAAGACCTGGGAGTCTAGTGGAGAGAAACACACAGGTTATTGGACACAAATGAAAAATAATATAGTACTGAAAGAGGCATGACAACTCTGTTTTTC

Coding sequences of Glyma06g13800

Limit To All Plant Sequences

>Glyma06g13800.1   sequence type=CDS   gene model=Glyma06g13800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTTCATCGGATACGAAGCTCCTGCAAGACCTGTTGTTGTACGCAGCGAGCGCAGCGCTGAGTTGCTTGGTACTATTCGCGGGTTTGAGACACCTGGACCCTAATCGCGAAGCATCGAAGAAGGCTCTCGAGCACAAGAAAGAGATTGCAAAGCGTCTTGGTCGTCCCCTTATTCAGACTAACCCTTACGAGGATGTAATAGCCTGTGACGTTATAAATCCTGATCACATCAATGTGGAGTTCAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGACTTGTTTTCACATGGCAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCGCCCGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCCAGAGCAGTTTTTATTAACGTGAGAATATCAAACCTGATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTTGCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTGGAACAGATCACGAGGCTATGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGATTTACAACAGATCAGAATGCTCAAGTTATGGTTCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGGCTGAAATATTGAAGGTTGTCTTAAAGGGTGAGAGGGTTGAAGACAACATAGACTTTGGTCATATAGCTGGTTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCATGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAAAGAAGACAAAGGTTGCTGCTAGTGAATACGGTGGATTCAGCCTTCAGTCACCTTCAAGATGGACAGTGCCTGGTGAGTCAGGTGATTCTCAGTTTCAAGCTGCAATCCATGAAATCTCTAAGCTTGTGGTTTCTCACATGATTAACCTCCAATCAGATTCCCAGGATCCTTAA

>Glyma06g13800.2   sequence type=CDS   gene model=Glyma06g13800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTTCATCGGATACGAAGCTCCTGCAAGACCTGTTGTTGTACGCAGCGAGCGCAGCGCTGAGTTGCTTGGTACTATTCGCGGGTTTGAGACACCTGGACCCTAATCGCGAAGCATCGAAGAAGGCTCTCGAGCACAAGAAAGAGATTGCAAAGCGTCTTGGTCGTCCCCTTATTCAGACTAACCCTTACGAGGATGTAATAGCCTGTGACGTTATAAATCCTGATCACATCAATGTGGAGTTCAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGACTTGTTTTCACATGGCAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCGCCCGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCCAGAGCAGTTTTTATTAACGTGAGAATATCAAACCTGATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTTGCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTGGAACAGATCACGAGGCTATGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGATTTACAACAGATCAGAATGCTCAAGTTATGGTTCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGGCTGAAATATTGAAGGTTGTCTTAAAGGGTGAGAGGGTTGAAGACAACATAGACTTTGGTCATATAGCTGGTTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCATGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAAAGAAGACAAAGGTTGCTGCTAGTGAATACGGTGGATTCAGCCTTCAGTCACCTTCAAGATGGACAGTGCCTGGTGAGTCAGAGTAA

>Glyma06g13800.3   sequence type=CDS   gene model=Glyma06g13800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGGTTCATCGGATACGAAGCTCCTGCAAGACCTGTTGTTGTACGCAGCGAGCGCAGCGCTGAGTTGCTTGGTACTATTCGCGGGTTTGAGACACCTGGACCCTAATCGCGAAGCATCGAAGAAGGCTCTCGAGCACAAGAAAGAGATTGCAAAGCGTCTTGGTCGTCCCCTTATTCAGACTAACCCTTACGAGGATGTAATAGCCTGTGACGTTATAAATCCTGATCACATCAATGTGGAGTTCAACTCTATTGGGGGACTGGAAACAATCAAGCAAGCTTTGTTTGAGCTTGTTATTCTGCCTCTAAAAAGACCAGACTTGTTTTCACATGGCAAGCTTCTTGGACCACAAAAGGGGGTCCTGTTGTATGGACCGCCCGGCACTGGAAAAACCATGCTTGCCAAAGCTATTGCCAAGGAGTCCAGAGCAGTTTTTATTAACGTGAGAATATCAAACCTGATGAGCAAGTGGTTTGGGGATGCCCAAAAGCTTGTTGCTGCTGTATTTAGCTTGGCTTATAAGCTTCAGCCTGCCATCATATTCATTGATGAAGTAGACAGTTTTTTGGGTCAGCGTCGTGGAACAGATCACGAGGCTATGTTAAACATGAAAACTGAATTCATGGCTCTGTGGGATGGATTTACAACAGATCAGAATGCTCAAGTTATGGTTCTTGCAGCAACTAATCGTCCTTCAGAACTTGATGAAGCAATACTTCGGCGTCTTCCTCAAGCCTTTGAAATTGGAATTCCAGACCAAAGGGAGAGGGCTGAAATATTGAAGGTTGTCTTAAAGGGTGAGAGGGTTGAAGACAACATAGACTTTGGTCATATAGCTGGTTTGTGTGAGGGTTACACTGGTTCAGATCTATTTGATCTTTGCAAGAAAGCTGCCTATTTTCCTATTAGAGAACTACTGGATGAAGAGAAGAAAGGAAAACAATCTCATGCCCCTAGACCTTTGTCCCAGTTAGATTTTGAGAAGGCCCTTGCTACTTCAAAGAAGACAAAGGTTGCTGCTAGTGAATACGGTGGATTCAGCCTTCAGTCACCTTCAAGATGGACAGTGCCTGAGTAA

Predicted protein sequences of Glyma06g13800

Limit To All Plant Sequences

>Glyma06g13800.1   sequence type=predicted peptide   gene model=Glyma06g13800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSSDTKLLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHINVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESRAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRGTDHEAMLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERAEILKVVLKGERVEDNIDFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKQSHAPRPLSQLDFEKALATSKKTKVAASEYGGFSLQSPSRWTVPGESGDSQFQAAIHEISKLVVSHMINLQSDSQDP*

>Glyma06g13800.2   sequence type=predicted peptide   gene model=Glyma06g13800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSSDTKLLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHINVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESRAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRGTDHEAMLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERAEILKVVLKGERVEDNIDFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKQSHAPRPLSQLDFEKALATSKKTKVAASEYGGFSLQSPSRWTVPGESE*

>Glyma06g13800.3   sequence type=predicted peptide   gene model=Glyma06g13800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGSSDTKLLQDLLLYAASAALSCLVLFAGLRHLDPNREASKKALEHKKEIAKRLGRPLIQTNPYEDVIACDVINPDHINVEFNSIGGLETIKQALFELVILPLKRPDLFSHGKLLGPQKGVLLYGPPGTGKTMLAKAIAKESRAVFINVRISNLMSKWFGDAQKLVAAVFSLAYKLQPAIIFIDEVDSFLGQRRGTDHEAMLNMKTEFMALWDGFTTDQNAQVMVLAATNRPSELDEAILRRLPQAFEIGIPDQRERAEILKVVLKGERVEDNIDFGHIAGLCEGYTGSDLFDLCKKAAYFPIRELLDEEKKGKQSHAPRPLSQLDFEKALATSKKTKVAASEYGGFSLQSPSRWTVPE*

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