Report for Sequence Feature Glyma06g13760
Feature Type: gene_model
Chromosome: Gm06
Start: 10886495
stop: 10890619
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g13760
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G27720 AT
Annotation by Michelle Graham. TAIR10: Major facilitator superfamily protein | chr4:13831203-13833521 FORWARD LENGTH=460
SoyBase E_val: 0 ISS
GO:0005768 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: endosome
SoyBase N/A ISS
GO:0005794 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus
SoyBase N/A ISS
GO:0005802 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: trans-Golgi network
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
KOG4332
KOG
Predicted sugar transporter
JGI ISS
PTHR24003 Panther
MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PR
JGI ISS
PTHR24003:SF315 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF05631 PFAM
Protein of unknown function (DUF791)
JGI ISS
UniRef100_G7J858 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Major facilitator superfamily domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J858_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1KAW7 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAW7_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g13760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g13760
Paralog Evidence Comments
Glyma04g41090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g13760 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g132500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g13760
Transcripts of Glyma06g13760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g13760.2 sequence type=transcript gene model=Glyma06g13760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
TAGCATGGCATGGTATTTGTATAAATAAATGGCAATTGAATTTACCGGGAGTGGTAGAAGCATAAAAGGTAGAACCGGTTATAGGCAGTAAAGGTGAGGGTGGAATCGCTGCAGAGGATCAGAGCAGCGTTTGGAGGGATATATATAAGGGTCTCTATAGCTTGGAAGTTGGCATCGTGAGAAAAGAGAAAGGAAGGAAAAATGGAGTTGTTCTTCTACGCGGTGTTCGGCGGTTTGGGAGCGGTTGTTGCAGTGACGGAGCTGAGCAAGAGCAACAAGGACCGAATCAACACCTCTTCCGCATTCAATTCCTTCAAGAACAACTACCTCATCGTCTATTCCCTCATGATGGCTGGAGATTGGCTACAAGGTCCATATGTCTACTACCTTTACAGTACATATGGATATGGGAAGGGAGACATAGGACAACTCTTCATTGCTGGTTTTGGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGCATCACCAAGCATTCTCCTCATTACAAAGTCCTGATGTTGGGCCGTATTTTGGGAGGTATTGCCACTTCACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTTCTTGGAAATGGTCTTGTTGCTATTTTGTCTGGGCTGTTTGGAAATGTACTTGTTGATACATTGGCTCTTGGACCTGTGGCCCCCTTTGATGCTGCTTCATGTTTTCTTGCTATTGGTATGGCCATCATACTATCTTCATGGTCAGAGAATTTCGGGGATCCTTCAGAGAACAAGGACTTGCTTACCCAATTTAGGGGTGCTGCTGTGGCCATTGCTTCTGATGAAAAGATAGCCTTGCTGGGTGCCATACAGTCTCTCTTTGAAGGTTCAATGTACACCTTTGTGTTTCTATGGACTCCTGCATTGAGCCCAAATGATGAAGAGATTCCCCATGGTTTTATTTTTGCAACATTTATGTTGGCTTCAATGTTGGGAAGCTCGCTTGCATCGAGGTTGATGGCCCGTTCTTCACTCCGAGTAGAGAGCTATATGCAGATTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACTTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATATTCTGGCCATCCATTATGAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTCAACATTTTTGTGTGTGTTGTGCTGTACAATGTATGTTACACAATCTACTACTTCAATGCAATGCTTGAGCTTACCAATGCAGTAGTATTTTCTTATCTCTGGTTTTGACTAATTGTGTATTTTCTCGATGCAGGTTGATGCATTCCCTATCACTGTTATGTTTGGCATGTGCTCAATTTTCCTTTTGGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAAAAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGAACCTTTAACTGGCTTTTGCCTGAGTTTTGAGGAGGCACCGAACTTAGCTACTTAAGTCTTACTAATGCAGTTTCCGTCTACATATGTGCACGATGCGATTTGAGTGAAGGTAAACCTGATGCTCACAAAGAGAAGGGATTGAAGGAACAAGCAGAAAGGACGAGTGGAACAATTTTTTTAAAGTGTTTTTGGTATAAATATTGTAGTGCATTAGATTTCTATTGAGGAGAAATCTCCGTTTTGGTAGTACTGATGGTATTCTTTTGGGGGGGCAGTATCTAAGTTTGTCCCGTTAGGGAATAGTATATATGCCACCATACCATGTCTTTCGTTGTCTTTTAATTTTGTAATGAAATCGCACTCCATTCAATTAATGCATCTTTTATTTTTATTTCTTTTTATCTTCAGTTATTTACCCTCAGCTATTAATTATGGTGGTGCTTGTGTTGCCTCACGAGTGGAAAGATGCTAAAATTTTAT
Coding sequences of Glyma06g13760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g13760.1 sequence type=CDS gene model=Glyma06g13760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTGTTCTTCTACGCGGTGTTCGGCGGTTTGGGAGCGGTTGTTGCAGTGACGGAGCTGAGCAAGAGCAACAAGGACCGAATCAACACCTCTTCCGCATTCAATTCCTTCAAGAACAACTACCTCATCGTCTATTCCCTCATGATGGCTGGAGATTGGCTACAAGGTCCATATGTCTACTACCTTTACAGTACATATGGATATGGGAAGGGAGACATAGGACAACTCTTCATTGCTGGTTTTGGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGCATCACCAAGCATTCTCCTCATTACAAAGTCCTGATGTTGGGCCGTATTTTGGGAGGTATTGCCACTTCACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTTCTTGGAAATGGTCTTGTTGCTATTTTGTCTGGGCTGTTTGGAAATGTACTTGTTGATACATTGGCTCTTGGACCTGTGGCCCCCTTTGATGCTGCTTCATGTTTTCTTGCTATTGGTATGGCCATCATACTATCTTCATGGTCAGAGAATTTCGGGGATCCTTCAGAGAACAAGGACTTGCTTACCCAATTTAGGGGTGCTGCTGTGGCCATTGCTTCTGATGAAAAGATAGCCTTGCTGGGTGCCATACAGTCTCTCTTTGAAGGTTCAATGTACACCTTTGTGTTTCTATGGACTCCTGCATTGAGCCCAAATGATGAAGAGATTCCCCATGGTTTTATTTTTGCAACATTTATGTTGGCTTCAATGTTGGGAAGCTCGCTTGCATCGAGGTTGATGGCCCGTTCTTCACTCCGAGTAGAGAGCTATATGCAGATTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACTTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATATTCTGGCCATCCATTATGAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTCAACATTTTTGTGTGTGTTGTGCTGTACAATGTTGATGCATTCCCTATCACTGTTATGTTTGGCATGTGCTCAATTTTCCTTTTGGTGGCTTGTATCTTGCAAAGGCGACTGATGGTGATTTCCGATAAGCCAAAAACAGAAGATTGGCAATTGAAGGATAGGGACGCAGAGTCAGAACCATTGAACCTTTAA
>Glyma06g13760.2 sequence type=CDS gene model=Glyma06g13760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTTGTTCTTCTACGCGGTGTTCGGCGGTTTGGGAGCGGTTGTTGCAGTGACGGAGCTGAGCAAGAGCAACAAGGACCGAATCAACACCTCTTCCGCATTCAATTCCTTCAAGAACAACTACCTCATCGTCTATTCCCTCATGATGGCTGGAGATTGGCTACAAGGTCCATATGTCTACTACCTTTACAGTACATATGGATATGGGAAGGGAGACATAGGACAACTCTTCATTGCTGGTTTTGGGTCTTCCATGCTCTTTGGAACAATTGTCGGATCTCTAGCTGACAAACAAGGCCGGAAGAGGGCTTGTGTGACTTACTGCATAACCTACATTTTGAGTTGCATCACCAAGCATTCTCCTCATTACAAAGTCCTGATGTTGGGCCGTATTTTGGGAGGTATTGCCACTTCACTTCTGTTTTCAGCATTTGAATCGTGGCTTGTTGCCGAGCACTTCAAGAGGGGCTTTGATCAACAATGGCTATCATTAACATTCTCAAAGGCTATATTTCTTGGAAATGGTCTTGTTGCTATTTTGTCTGGGCTGTTTGGAAATGTACTTGTTGATACATTGGCTCTTGGACCTGTGGCCCCCTTTGATGCTGCTTCATGTTTTCTTGCTATTGGTATGGCCATCATACTATCTTCATGGTCAGAGAATTTCGGGGATCCTTCAGAGAACAAGGACTTGCTTACCCAATTTAGGGGTGCTGCTGTGGCCATTGCTTCTGATGAAAAGATAGCCTTGCTGGGTGCCATACAGTCTCTCTTTGAAGGTTCAATGTACACCTTTGTGTTTCTATGGACTCCTGCATTGAGCCCAAATGATGAAGAGATTCCCCATGGTTTTATTTTTGCAACATTTATGTTGGCTTCAATGTTGGGAAGCTCGCTTGCATCGAGGTTGATGGCCCGTTCTTCACTCCGAGTAGAGAGCTATATGCAGATTGTTTTTGCAGTTTCTTCTGCTGCTCTGATGCTCCCCATTTTGACCACTTTCTTGGTAGCTCCTTCTGGAGTGAAAGGTGGAAGCATCTCATTCTCTGGTTGCATTCAGCTTCTTGGCTTCTGTGCTTTTGAGAGTTGTGTTGGCATATTCTGGCCATCCATTATGAAGATGAGATCTCAATACATTCCTGAGGAGGCCAGGAGCACCATCATGAACTTTTTCCGCATTCCTCTCAACATTTTTGTGTGTGTTGTGCTGTACAATGTATGTTACACAATCTACTACTTCAATGCAATGCTTGAGCTTACCAATGCAGTAGTATTTTCTTATCTCTGGTTTTGA
Predicted protein sequences of Glyma06g13760
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g13760.1 sequence type=predicted peptide gene model=Glyma06g13760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MELFFYAVFGGLGAVVAVTELSKSNKDRINTSSAFNSFKNNYLIVYSLMMAGDWLQGPYVYYLYSTYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPHYKVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAILSGLFGNVLVDTLALGPVAPFDAASCFLAIGMAIILSSWSENFGDPSENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSSLRVESYMQIVFAVSSAALMLPILTTFLVAPSGVKGGSISFSGCIQLLGFCAFESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVDAFPITVMFGMCSIFLLVACILQRRLMVISDKPKTEDWQLKDRDAESEPLNL*
>Glyma06g13760.2 sequence type=predicted peptide gene model=Glyma06g13760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MELFFYAVFGGLGAVVAVTELSKSNKDRINTSSAFNSFKNNYLIVYSLMMAGDWLQGPYVYYLYSTYGYGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHSPHYKVLMLGRILGGIATSLLFSAFESWLVAEHFKRGFDQQWLSLTFSKAIFLGNGLVAILSGLFGNVLVDTLALGPVAPFDAASCFLAIGMAIILSSWSENFGDPSENKDLLTQFRGAAVAIASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLMARSSLRVESYMQIVFAVSSAALMLPILTTFLVAPSGVKGGSISFSGCIQLLGFCAFESCVGIFWPSIMKMRSQYIPEEARSTIMNFFRIPLNIFVCVVLYNVCYTIYYFNAMLELTNAVVFSYLWF*