Report for Sequence Feature Glyma06g13660
Feature Type: gene_model
Chromosome: Gm06
Start: 10770185
stop: 10775322
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g13660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G24320 AT
Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr5:8284858-8287651 REVERSE LENGTH=694
SoyBase E_val: 0 ISS
GO:0007165 GO-bp
Annotation by Michelle Graham. GO Biological Process: signal transduction
SoyBase N/A ISS
GO:0010228 GO-bp
Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0050665 GO-bp
Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide biosynthetic process
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005834 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex
SoyBase N/A ISS
GO:0004871 GO-mf
Annotation by Michelle Graham. GO Molecular Function: signal transducer activity
SoyBase N/A ISS
KOG0283
KOG
WD40 repeat-containing protein
JGI ISS
PTHR14221 Panther
WD REPEAT DOMAIN 44
JGI ISS
PF00400 PFAM
WD domain, G-beta repeat
JGI ISS
UniRef100_G7ZWE5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7ZWE5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI00023395FA UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023395FA related cluster n=1 Tax=unknown RepID=UPI00023395FA
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g13660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g13660
Paralog Evidence Comments
Glyma04g41200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g13660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g131400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g13660
Coding sequences of Glyma06g13660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g13660.1 sequence type=CDS gene model=Glyma06g13660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGTAGCTTCAGCGAAGACGAGGAATGTCGGTTTTTCGATGCTCAAGAGGATGTTGTTGTGTCCATTGCAGATGATGAAGGGGTATCCAATGGTTTTGATTATGAAATGTGGATTCGGAGTCCAAGGAGTGTGAGTGAGCGTAGGGGCACGTTTATGAAGAGGATGGGACTGAGTAGTGTGGATTTGGTTGCCCTTGAGAATGAAAACTCAGTAGATGTGTGTAGTGTTGAGTGTAAAGAGGAAGTGATGGATAGAGTAAATGTTAACAGTGGCGCTGTGACCCGAAATTGTGTTATGGAAGAGGAATTCTGTTCAAGCAGGACATCAATGTCTTGTTGGTCTAGGGAGAATTCTTCAGGGGGGTTTGGTATAGTGGATAACTCGCCGTGTCAAGATGGAAATTTGGATCAGGAGGGGCTGCAGTGTAGGGAGATGAGTGAGGGAAGAGATCTGGATTCAGATCGGTCAGTGGTTGCAGAGGAACATAAGGAATCGGAGAATGCCTTTAGGGAAACGGATGCTAATGTTTCTGTTGGGAAGATGAACAAGTATAAAAAGGGTTGGCTCAGAAGATTGCGGTCGATAACGTGCATGCTTAATAGGCAAGATGAAGGTGATAATGGGAGAGAAGAAGGTCTTGGTGAAATGTCAGGAACTTGTAGGCTTCAGAAAGTTAAGGTCCGTCAGTCCAAGAAGCAAATGAAGGAACTTTCGGCTCTTTACATTAGGCAAGATTTCCAAGCACATGAAGGTTCGATTTTGACCATGAAGTTCAGTCCTGATGGGCAGTATCTTGCTAGTGGTGGTGAAGACGGGGTTGTGCGCTTATGGCAAGTGGTTGAGGAGGATAGGTGTAATGAAGTTGACATTCCAGAAATTGATCCATCCTGCATTTATTTTACTGTAAATAATCTCTCTGAATTGACACCACTGTTTATGGATAAAGAAAAAATAAGCAAACTGAAGAGCCTGAAAAAAACATCAGATTCAGCTTGCATTGTTTTTCCTCCTAAGATCTTTCGGTTGTTGGAGAAACCATTGCATGAGTTTCGGGGGCACAGAGGTGAAGTTTTGGATCTCTCTTGGTCAAACAATAATTATCTTCTGTCATCTTCAGTTGACAAAACTGTCCGTCTATGGCAAGTGAATCATGACCATTGCTTGAAAGTTTTCTCACACAGTAATTATGTGACGTGCATACAATTCAATCCTGTGGATGATAATTATTTCATTAGTGGATCTATAGATGGGAAAGTGCGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGATTGATATCAAAGATATAGTGACGGCAGTATGCTATCGGCCTGATGGGCAGGGAGGGATCATTGGCTCCTTGACTGGCAATTGTCGATTTTATAATGTATCAGAGAATCTCTTGCAATTGGATTCCCAACTATGCTTAATTGGTAAAAAGAAACTTCCTGGCAGAGGGATAACTGGGTTTCAGTTTCTTCCACAAGATTCTAACAAAGTTATGGTCTCCTGTGCTGATTCACAAGTCAGAATCCTTGACGGGCTTAATGTGATTGGCAAGTACAAAAGCCTTAGCACGGGGAGCCCAATGTGTGCATCAATGACTTCTGATGGGAAACATATTCTATCAGCATGTGAGGACTCTAATGTATATCTATGGAATGTTAGTCAAGAAGAGTCTAATCCCTTAAAAGCTAAGAAGATTACGTCTTGTGAGCGGTTTTTCTCAAATGCATCCGTAGCAGTACCTTGGCATGGTTTGAAATCTCAAAATATTGAAATCGAACATCAACTGGATGCCTTGGATAAAACATCATCTCAAGTTATACAACTCAGTCCACCTGCTTCGTTCTCTCTGAGTCAAGAGTTCTTCTTGGAGTCTTTTCCAAAGGGATCTGCAACTTGGCCAGAGGAGAAGCTTCCTGTTTCAAGCCCCAAGGCTAAAGCATCAGTGATGCGTAAATCCGAATACAAGTTCTTGAAATCTTCTTGCAAGAGTACCTCCTCTGCTCATGCGTGGGGTATGGTCATTGTCACTGCTGGCTGGGATGGTAGGATAAAATCATTCCACAATTATGGGCTACCTATACCGGCTTGA
Predicted protein sequences of Glyma06g13660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g13660.1 sequence type=predicted peptide gene model=Glyma06g13660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGSFSEDEECRFFDAQEDVVVSIADDEGVSNGFDYEMWIRSPRSVSERRGTFMKRMGLSSVDLVALENENSVDVCSVECKEEVMDRVNVNSGAVTRNCVMEEEFCSSRTSMSCWSRENSSGGFGIVDNSPCQDGNLDQEGLQCREMSEGRDLDSDRSVVAEEHKESENAFRETDANVSVGKMNKYKKGWLRRLRSITCMLNRQDEGDNGREEGLGEMSGTCRLQKVKVRQSKKQMKELSALYIRQDFQAHEGSILTMKFSPDGQYLASGGEDGVVRLWQVVEEDRCNEVDIPEIDPSCIYFTVNNLSELTPLFMDKEKISKLKSLKKTSDSACIVFPPKIFRLLEKPLHEFRGHRGEVLDLSWSNNNYLLSSSVDKTVRLWQVNHDHCLKVFSHSNYVTCIQFNPVDDNYFISGSIDGKVRIWAIPDCHVVDWIDIKDIVTAVCYRPDGQGGIIGSLTGNCRFYNVSENLLQLDSQLCLIGKKKLPGRGITGFQFLPQDSNKVMVSCADSQVRILDGLNVIGKYKSLSTGSPMCASMTSDGKHILSACEDSNVYLWNVSQEESNPLKAKKITSCERFFSNASVAVPWHGLKSQNIEIEHQLDALDKTSSQVIQLSPPASFSLSQEFFLESFPKGSATWPEEKLPVSSPKAKASVMRKSEYKFLKSSCKSTSSAHAWGMVIVTAGWDGRIKSFHNYGLPIPA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
