Glyma06g13600 - SoyBase

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Report for Sequence Feature Glyma06g13600

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10725066
stop:	10729488
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13600

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27800	AT	Annotation by Michelle Graham. TAIR10: thylakoid-associated phosphatase 38 \| chr4:13852013-13854091 REVERSE LENGTH=388	SoyBase	E_val: 2.00E-172	ISS
GO:0006470	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein dephosphorylation	SoyBase	N/A	ISS
GO:0009767	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosynthetic electron transport chain	SoyBase	N/A	ISS
GO:0016311	GO-bp	Annotation by Michelle Graham. GO Biological Process: dephosphorylation	SoyBase	N/A	ISS
GO:0080005	GO-bp	Annotation by Michelle Graham. GO Biological Process: photosystem stoichiometry adjustment	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008287	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: protein serine/threonine phosphatase complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009579	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: thylakoid	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
GO:0016791	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF95	Panther	PROTEIN PHOSPHATASE	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_B9T8J0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase, putative n=1 Tax=Ricinus communis RepID=B9T8J0_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KAU7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAU7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g13600

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g13600 not represented in the dataset	Glyma06g13600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13600

Paralog	Evidence	Comments
Glyma04g41250	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13600 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g130900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13600

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g13600

Limit To All Plant Sequences

>Glyma06g13600.2   sequence type=transcript   gene model=Glyma06g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAGAATCTGATCCCATAAGAGAATCCAATCCGTTAATGCAGTTAGAGGCTTCTATTAACTCACTTATCTGTCTATCTCCTTCCCCACCAAAACTCAACACAACAACATCACTCTTACAGCTTCCGAACCCTCCATCATGGCCTTGTCAAGTCCACACATACAAAGATTCCTCTTATGCAAGCTTCATAGCCGCTCCACCGCCAAGAACAGACACAGAAACAGCTTCACCGCCACAACCACCACCAGGAGCAGTTGCTGCTCTGCCATAGCCATTGATGCTCCGTCGTCTTTGACCGAAGTGCCCGGCATAAGATGGGGGTCCATAGCCTTGCAGGGTCTCCGTGAAGAGATGGAGGATGATATTATTGTTCGACCTGAGGGCCTTCAGGGCTTCACTTTTGCAGCTGTGTTTGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGTGCCAACTACAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGGTTACTATTAGTCGAGAAAGATTTCAAAGCCATTAAAAGGGCATTACAGGAGGCATTTCTCAAGGCTGACGCGAGGTTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACATCAACTGCCGTGTTCATTGGAGATGATGAGCTGCTAATTTCACATATTGGTGACTCATCAGCGGTTCTATGTAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCAATTGGGAGCAGCAAGACTTCTCTTCATGAAATTAGAAGAGTCAGAGAAGCAGGTGGATGGATTAACAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACGTGCGATTCAAAACAAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAGATGGTCAGCAAAGTTCATTTCTCGTGTACAACTCAACAACGACTTGGTTGTTGCATACCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTGAGGGATCAACTACGAAAACACGGAAACATTCAGGTATGCATAATGCTTTATATTTGAGGCCACTACACTAGTATCAATAAGCCATCAAAGTTGCAGCAATAATATTTTGCTTTTTCTTGTTTCAAATTCAGCAAGCATGTGAAGCGCTTGCAGAAGCCGCTTTGGTAAGTTTTAACGAATCTCGTGGCAGTGGTTATCAAAATGAAC

>Glyma06g13600.3   sequence type=transcript   gene model=Glyma06g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAGAGAATCTGATCCCATAAGAGAATCCAATCCGTTAATGCAGTTAGAGGCTTCTATTAACTCACTTATCTGTCTATCTCCTTCCCCACCAAAACTCAACACAACAACATCACTCTTACAGCTTCCGAACCCTCCATCATGGCCTTGTCAAGTCCACACATACAAAGATTCCTCTTATGCAAGCTTCATAGCCGCTCCACCGCCAAGAACAGACACAGAAACAGCTTCACCGCCACAACCACCACCAGGAGCAGTTGCTGCTCTGCCATAGCCATTGATGCTCCGTCGTCTTTGACCGAAGTGCCCGGCATAAGATGGGGGTCCATAGCCTTGCAGGGTCTCCGTGAAGAGATGGAGGATGATATTATTGTTCGACCTGAGGGCCTTCAGGGCTTCACTTTTGCAGCTGTGTTTGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGGTTACTATTAGTCGAGAAAGATTTCAAAGCCATTAAAAGGGCATTACAGGAGGCATTTCTCAAGGCTGACGCGAGGTTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACATCAACTGCCGTGTTCATTGGAGATGATGAGCTGCTAATTTCACATATTGGTGACTCATCAGCGGTTCTATGTAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCAATTGGGAGCAGCAAGACTTCTCTTCATGAAATTAGAAGAGTCAGAGAAGCAGGTGGATGGATTAACAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACGTGCGATTCAAAACAAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAGATGGTCAGCAAAGTTCATTTCTCGTGTACAACTCAACAACGACTTGGTTGTTGCATACCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTGAGGGATCAACTACGAAAACACGGAAACATTCAGCAAGCATGTGAAGCGCTTGCAGAAGCCGCTTTGGACCGACGTACACAGGATAATGTCAGCATTATAATTGCTGATTTTGGGAGGACAGACTGGCAGAATGCGCCATTGGAGCGACAAAATACTATACTTGAGCTGGTCCAAGCTCTTGCAACCATTGGAATTGTGTCCATTGGAATCTGGTTTTCATCACAGCTTTCTTTATAGATTCAAAAAATACCAGTCATGTACATAAAAAAGACATATACTTCTGAACTTCTAGCCTGTATAATCTTAATTGTACATGCCTCACATCTTAGAATCTACTTGGTTTAGGGCACAAAGAATTGTTAACAATAAATATTTTTTGAAGTATTAATCTTATTCTGATTCTAAAATTCAATTATTGCTTTGCACGGTTTGCCTAAGTCGATCACGTGCTTCTTCCA

Coding sequences of Glyma06g13600

Limit To All Plant Sequences

>Glyma06g13600.1   sequence type=CDS   gene model=Glyma06g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGTCAAGTCCACACATACAAAGATTCCTCTTATGCAAGCTTCATAGCCGCTCCACCGCCAAGAACAGACACAGAAACAGCTTCACCGCCACAACCACCACCAGGAGCAGTTGCTGCTCTGCCATAGCCATTGATGCTCCGTCGTCTTTGACCGAAGTGCCCGGCATAAGATGGGGGTCCATAGCCTTGCAGGGTCTCCGTGAAGAGATGGAGGATGATATTATTGTTCGACCTGAGGGCCTTCAGGGCTTCACTTTTGCAGCTGTGTTTGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGTGCCAACTACAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGGTTACTATTAGTCGAGAAAGATTTCAAAGCCATTAAAAGGGCATTACAGGAGGCATTTCTCAAGGCTGACGCGAGGTTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACATCAACTGCCGTGTTCATTGGAGATGATGAGCTGCTAATTTCACATATTGGTGACTCATCAGCGGTTCTATGTAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCAATTGGGAGCAGCAAGACTTCTCTTCATGAAATTAGAAGAGTCAGAGAAGCAGGTGGATGGATTAACAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACGTGCGATTCAAAACAAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAGATGGTCAGCAAAGTTCATTTCTCGTGTACAACTCAACAACGACTTGGTTGTTGCATACCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTGAGGGATCAACTACGAAAACACGGAAACATTCAGCAAGCATGTGAAGCGCTTGCAGAAGCCGCTTTGGACCGACGTACACAGGATAATGTCAGCATTATAATTGCTGATTTTGGGAGGACAGACTGGCAGAATGCGCCATTGGAGCGACAAAATACTATACTTGAGCTGGTCCAAGCTCTTGCAACCATTGGAATTGTGTCCATTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG

>Glyma06g13600.2   sequence type=CDS   gene model=Glyma06g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGTCAAGTCCACACATACAAAGATTCCTCTTATGCAAGCTTCATAGCCGCTCCACCGCCAAGAACAGACACAGAAACAGCTTCACCGCCACAACCACCACCAGGAGCAGTTGCTGCTCTGCCATAGCCATTGATGCTCCGTCGTCTTTGACCGAAGTGCCCGGCATAAGATGGGGGTCCATAGCCTTGCAGGGTCTCCGTGAAGAGATGGAGGATGATATTATTGTTCGACCTGAGGGCCTTCAGGGCTTCACTTTTGCAGCTGTGTTTGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGTGCCAACTACAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGGTTACTATTAGTCGAGAAAGATTTCAAAGCCATTAAAAGGGCATTACAGGAGGCATTTCTCAAGGCTGACGCGAGGTTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACATCAACTGCCGTGTTCATTGGAGATGATGAGCTGCTAATTTCACATATTGGTGACTCATCAGCGGTTCTATGTAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCAATTGGGAGCAGCAAGACTTCTCTTCATGAAATTAGAAGAGTCAGAGAAGCAGGTGGATGGATTAACAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACGTGCGATTCAAAACAAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAGATGGTCAGCAAAGTTCATTTCTCGTGTACAACTCAACAACGACTTGGTTGTTGCATACCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTGAGGGATCAACTACGAAAACACGGAAACATTCAGGTATGCATAATGCTTTATATTTGA

>Glyma06g13600.3   sequence type=CDS   gene model=Glyma06g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCTTGTCAAGTCCACACATACAAAGATTCCTCTTATGCAAGCTTCATAGCCGCTCCACCGCCAAGAACAGACACAGAAACAGCTTCACCGCCACAACCACCACCAGGAGCAGTTGCTGCTCTGCCATAGCCATTGATGCTCCGTCGTCTTTGACCGAAGTGCCCGGCATAAGATGGGGGTCCATAGCCTTGCAGGGTCTCCGTGAAGAGATGGAGGATGATATTATTGTTCGACCTGAGGGCCTTCAGGGCTTCACTTTTGCAGCTGTGTTTGATGGCCATGGAGGGTTTTCTTCTGTCGAGTTCCTCAGGGATGAGCTGTACAAGGAGTGTGTTGAAGCTTTACAAGGTGGGTTACTATTAGTCGAGAAAGATTTCAAAGCCATTAAAAGGGCATTACAGGAGGCATTTCTCAAGGCTGACGCGAGGTTATTAAAACGGCTTGAAATGAATGGAGAGGAGGATGAATCAGGTGCTACATCAACTGCCGTGTTCATTGGAGATGATGAGCTGCTAATTTCACATATTGGTGACTCATCAGCGGTTCTATGTAGATCTGGAAAAGCAGAAGTTCTGACTAGTCCTCACCGTCCAATTGGGAGCAGCAAGACTTCTCTTCATGAAATTAGAAGAGTCAGAGAAGCAGGTGGATGGATTAACAATGGTAGAATTTGTGGAGACATTGCTGTATCTCGTGCATTTGGGGACGTGCGATTCAAAACAAAGAAGAATGAGATGCTGCAAAAAGGAGTTCAGGAAGGAAGATGGTCAGCAAAGTTCATTTCTCGTGTACAACTCAACAACGACTTGGTTGTTGCATACCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTGTAGTATTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGAAGCAGTTTCTTTAGTGAGGGATCAACTACGAAAACACGGAAACATTCAGCAAGCATGTGAAGCGCTTGCAGAAGCCGCTTTGGACCGACGTACACAGGATAATGTCAGCATTATAATTGCTGATTTTGGGAGGACAGACTGGCAGAATGCGCCATTGGAGCGACAAAATACTATACTTGAGCTGGTCCAAGCTCTTGCAACCATTGGAATTGTGTCCATTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG

Predicted protein sequences of Glyma06g13600

Limit To All Plant Sequences

>Glyma06g13600.1   sequence type=predicted peptide   gene model=Glyma06g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSPHIQRFLLCKLHSRSTAKNRHRNSFTATTTTRSSCCSAIAIDAPSSLTEVPGIRWGSIALQGLREEMEDDIIVRPEGLQGFTFAAVFDGHGGFSSVEFLSANYRDELYKECVEALQGGLLLVEKDFKAIKRALQEAFLKADARLLKRLEMNGEEDESGATSTAVFIGDDELLISHIGDSSAVLCRSGKAEVLTSPHRPIGSSKTSLHEIRRVREAGGWINNGRICGDIAVSRAFGDVRFKTKKNEMLQKGVQEGRWSAKFISRVQLNNDLVVAYPDIYQVTLGSDAEFVVLASDGLWDYMSSSEAVSLVRDQLRKHGNIQQACEALAEAALDRRTQDNVSIIIADFGRTDWQNAPLERQNTILELVQALATIGIVSIGIWFSSQLSL*

>Glyma06g13600.2   sequence type=predicted peptide   gene model=Glyma06g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSPHIQRFLLCKLHSRSTAKNRHRNSFTATTTTRSSCCSAIAIDAPSSLTEVPGIRWGSIALQGLREEMEDDIIVRPEGLQGFTFAAVFDGHGGFSSVEFLSANYRDELYKECVEALQGGLLLVEKDFKAIKRALQEAFLKADARLLKRLEMNGEEDESGATSTAVFIGDDELLISHIGDSSAVLCRSGKAEVLTSPHRPIGSSKTSLHEIRRVREAGGWINNGRICGDIAVSRAFGDVRFKTKKNEMLQKGVQEGRWSAKFISRVQLNNDLVVAYPDIYQVTLGSDAEFVVLASDGLWDYMSSSEAVSLVRDQLRKHGNIQVCIMLYI*

>Glyma06g13600.3   sequence type=predicted peptide   gene model=Glyma06g13600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALSSPHIQRFLLCKLHSRSTAKNRHRNSFTATTTTRSSCCSAIAIDAPSSLTEVPGIRWGSIALQGLREEMEDDIIVRPEGLQGFTFAAVFDGHGGFSSVEFLRDELYKECVEALQGGLLLVEKDFKAIKRALQEAFLKADARLLKRLEMNGEEDESGATSTAVFIGDDELLISHIGDSSAVLCRSGKAEVLTSPHRPIGSSKTSLHEIRRVREAGGWINNGRICGDIAVSRAFGDVRFKTKKNEMLQKGVQEGRWSAKFISRVQLNNDLVVAYPDIYQVTLGSDAEFVVLASDGLWDYMSSSEAVSLVRDQLRKHGNIQQACEALAEAALDRRTQDNVSIIIADFGRTDWQNAPLERQNTILELVQALATIGIVSIGIWFSSQLSL*

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