Glyma06g13570 - SoyBase

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Report for Sequence Feature Glyma06g13570

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10689800
stop:	10696868
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53080	AT	Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein \| chr5:21520624-21523158 FORWARD LENGTH=564	SoyBase	E_val: 4.00E-154	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0042802	GO-mf	Annotation by Michelle Graham. GO Molecular Function: identical protein binding	SoyBase	N/A	ISS
KOG1840	KOG	Kinesin light chain	JGI		ISS
PTHR19959	Panther	KINESIN LIGHT CHAIN	JGI		ISS
UniRef100_G7J7G9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Kinesin light chain n=1 Tax=Medicago truncatula RepID=G7J7G9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1JYQ2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1JYQ2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g13570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13570

Paralog	Evidence	Comments
Glyma04g41290	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g130300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g13570

Limit To All Plant Sequences

>Glyma06g13570.2   sequence type=CDS   gene model=Glyma06g13570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTGTCACCGTGTGAGTTGAAAAGCATAACATGCTTCTCAGTTTGTAATCAAAAGCAAAAATACAATCAAAAGCTTGACATTATTCCCATTAGAACTGTTTGTGTTCAGTTCTGCATCTCAAGATCCTCAGTTGGGTTTGTGGAATTCGGTGGGACAGGCAGACACAGTGATGCATATTCAGGATTTTCAGCTCCAAATGACTATCAGAGGTGGGAATTGGTTCAAATGGTCTTCCTTCCTTCTATTGCTTGTGCCAAATTATTTGATAAAGTGAAAAGAATGATTAGTATGGGAAACAAAAATGATGCTATAGACTTGCTAACTGCAAATTATGAAGTGGTGAAAGAGCGCCTTAATGCAGGTACTAAAGGCACAGAAGAAGCTGTAACTTTGGACATCATAGCACCAGGTTACATGGCTGTTGGAGACTTAAAATTTGCTGGATCTCTGTTGAACATGAAGAAAGAAGTTGTTGACAATTTGAAGGATGATGCTCCTCGTCTAGATTCAATACTTATGCATATGGGAAGTATGTATGCAACATTGAGCAAGTTTGAAAAATCATTGGACGTGTATGAGAGGGCTGTCTACATTATGGAGAGGACCTATGGTAAGGATAGCACTTTTCTTGTCACACCCTGTTTGGGTATGGCAAAAGTTATTGGTTCTATTGGAAAAGCAACAAAAGCAATAGAGACATACCAGCGTGTGATCACTCTTTTGGAATCAAGTAGAGGTGCCAATAGTAAAGATTTGGTTGTACCTTTACTAAGTCTAGCCAATCTTTTACTAAAAGAAAGGAGAGCCAATGACGCTGAAACTCATTTTACTAGAATTCTTAACATATACACCGAATTATATGGACAAAATGATGGAAAAATTGGGATGGCTATGAGTTCCCTAGCCCGAGTTAAGTGTGCTCAAGATGAAGCAATTCAATTGTTTAAACGTGCTCCTCAGGTCATGAAGGATTCAAATTACTTGTCACCGGATGACAGTATAATGGAAAAGATGAGGGTAGATCTAGCGGAATTACTTCATACTGTTGGGAGGAGTTTGTGGATCACTGAGAGGTACAAAGGAAAGCAGCACCCCAGCCAGAACTATGCGGATGCCGAGAATTTGTTGAGAAGAAGTTTGCAAATCATGATAAAGCAAAAGGGAACTGATGACCAGTCCATCAGCTTTCCAATGTTATACCTTGCAGTTTCACTCTACCATTTGAAAAAAGATGAAGATGCTGAGAAATTTGCCCTGGAGGTTTTGCGCATCCGTGAGAAGGCCTTTGGAAAAGATTCTCTTCCTGTTGGGGAGGGTTTGGATTGTTTGGTGTCTATTCAAACCAGACTTGGTAGGGATGAAAATGAGTTACTCGAGCTGCTTAGAAGGATCCTGAATATTCAAGAGAGAATTTGGACATGA

Predicted protein sequences of Glyma06g13570

Limit To All Plant Sequences

>Glyma06g13570.2   sequence type=predicted peptide   gene model=Glyma06g13570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSPCELKSITCFSVCNQKQKYNQKLDIIPIRTVCVQFCISRSSVGFVEFGGTGRHSDAYSGFSAPNDYQRWELVQMVFLPSIACAKLFDKVKRMISMGNKNDAIDLLTANYEVVKERLNAGTKGTEEAVTLDIIAPGYMAVGDLKFAGSLLNMKKEVVDNLKDDAPRLDSILMHMGSMYATLSKFEKSLDVYERAVYIMERTYGKDSTFLVTPCLGMAKVIGSIGKATKAIETYQRVITLLESSRGANSKDLVVPLLSLANLLLKERRANDAETHFTRILNIYTELYGQNDGKIGMAMSSLARVKCAQDEAIQLFKRAPQVMKDSNYLSPDDSIMEKMRVDLAELLHTVGRSLWITERYKGKQHPSQNYADAENLLRRSLQIMIKQKGTDDQSISFPMLYLAVSLYHLKKDEDAEKFALEVLRIREKAFGKDSLPVGEGLDCLVSIQTRLGRDENELLELLRRILNIQERIWT*

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