Glyma06g13530 - SoyBase

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Report for Sequence Feature Glyma06g13530

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10658515
stop:	10659920
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53040	AT	Annotation by Michelle Graham. TAIR10: RWP-RK domain-containing protein \| chr5:21506967-21507948 REVERSE LENGTH=256	SoyBase	E_val: 2.00E-35	ISS
GO:0009790	GO-bp	Annotation by Michelle Graham. GO Biological Process: embryo development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF02042	PFAM	RWP-RK domain	JGI		ISS
UniRef100_G7J7G0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RWP-RK domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J7G0_MEDTR	SoyBase	E_val: 2.00E-65	ISS
UniRef100_I1KAT8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KAT8_SOYBN	SoyBase	E_val: 3.00E-157	ISS

Expression Patterns of Glyma06g13530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g13530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g129900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g13530

Limit To All Plant Sequences

>Glyma06g13530.2   sequence type=CDS   gene model=Glyma06g13530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTTTGTCTTTGTCTCCGACAACGATTTCCCCAACCTTGACATCATTCCTCATACCCTCAACAACTCTTGTTTTTGCTCTCCTCATCTAAACGACACTCACAAAATAATGGAGATTTCACCATTAAAGGGTTATTTCTCCCACCTTGATTGGACACCACAGTCGCCATATCCAAGCAATGAGCTTCCGGATTTGGAAAGTTGGAACCTCGATTTCATCCTCCCACCCCTTGATGAAGATTTGGAGGAGTTGGACCAAAAGCAATTGAAAAGTGTTGTTCCCCAAGGGTTTCATTGCAATCAGGAAAAGGGTTTTGGGGATGCTTTATTGGCCACTGAAAATGTTTCTGCCACTTGTGTGAAGAAAGAGAAAGTGCAGATTATTGATCAGAGTCCTCTAGCTAGTAGCAGCAGTACGAAGAAGAGGCCATGTGCTTTGGAATTTGAGGAAATAAGCAAGTATTTTGGCGTTCCCATAAATGAAGCTGCCAAGCAAATGAATGTTGGGGTAACCATGTTGAAGAAAAGGTGCAGGGAGCTCAACATCATGAGATGGCCTCGTAGGAAAATCAAGAGCTTGCAAATGGTCATCGACAGTGTTAAGGAAATGGGTTTGGAAGACGAGGTTGCTAGGTTGGAGGAGCATAAAAAGTTGTTGGAAAAATTACCAGGACTGGAACTAAGTGAAGAAGCCAAGAAGCTGAGGCATGCTTGCTTTAAAGCTAATTACAAAAAGAAAAGGTGCATGGCACTCCAAGCTTGA

Predicted protein sequences of Glyma06g13530

Limit To All Plant Sequences

>Glyma06g13530.2   sequence type=predicted peptide   gene model=Glyma06g13530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDFVFVSDNDFPNLDIIPHTLNNSCFCSPHLNDTHKIMEISPLKGYFSHLDWTPQSPYPSNELPDLESWNLDFILPPLDEDLEELDQKQLKSVVPQGFHCNQEKGFGDALLATENVSATCVKKEKVQIIDQSPLASSSSTKKRPCALEFEEISKYFGVPINEAAKQMNVGVTMLKKRCRELNIMRWPRRKIKSLQMVIDSVKEMGLEDEVARLEEHKKLLEKLPGLELSEEAKKLRHACFKANYKKKRCMALQA*

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