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Report for Sequence Feature Glyma06g13520

Feature Type:gene_model
Chromosome:Gm06
Start:10647665
stop:10650037
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g13520
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G27810AT Annotation by Michelle Graham. TAIR10: unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:13854641-13855671 REVERSE LENGTH=196 SoyBaseE_val: 1.00E-24ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05097PFAM Protein of unknown function (DUF688) JGI ISS
UniRef100_I1KAT6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAT6_SOYBN SoyBaseE_val: 2.00E-155ISS

Expression Patterns of Glyma06g13520
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g13520 not represented in the dataset
Glyma06g13520 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13520
ParalogEvidenceComments
Glyma04g41330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13520 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g129800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g13520
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g13520
>Glyma06g13520.1   sequence type=CDS   gene model=Glyma06g13520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCTGAGTCAGAGAATAACAAGTGTAGTGATGATCATGTGCTGACAAAGCTCTCTTTCTTAATCTCACGCCCGACCATGCCGCCGGAAACTCTCATGTCGCCGCCGCAGAACACGATCTCGGTTCCCTTCAAGTGGGAGGAAGCACCGGGGAAGCCTAGGCATTGCCACACCGAATCGGATCCCGAGGACAGTACTACTGCCGTTAAAAAAACCTTGGAGCTGCCTCCCAGGTTGTTGTTTCTGTTGGACAGTACCAACAAGGTTTCCGACGTGGACGGGCCTTCTCCTACGACCGTGCTTGATGGGCCTTACGTGGGCCGGGCCATGTCCTTCACCACCTCCTATAGGACTCCCAGGGCTAACTGGAATTCCAATTTTGGCTCCTCCAGGTGGAGCGGTTACAAGAAGTTTACCACCGAGGATGCTGAGGGCAGTTTTGACTTTTCACCCCACTCCTGCTCTTCTATGCCTAACGTGAAGATCACAAGGGTTCCAAGACGAGGAAGCTTCTGGGTTCTGTCTAAGCAAAGGTCACATATGTGGGCAAGCATTTATGAAAGCCTTAAGCAAGTGGTCCCATGGAGACGCAAGCAACAGACGCAGAAAAAATTTGCTTCCAAATTTGACACTGTTTAG
Predicted protein sequences of Glyma06g13520
>Glyma06g13520.1   sequence type=predicted peptide   gene model=Glyma06g13520   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSESENNKCSDDHVLTKLSFLISRPTMPPETLMSPPQNTISVPFKWEEAPGKPRHCHTESDPEDSTTAVKKTLELPPRLLFLLDSTNKVSDVDGPSPTTVLDGPYVGRAMSFTTSYRTPRANWNSNFGSSRWSGYKKFTTEDAEGSFDFSPHSCSSMPNVKITRVPRRGSFWVLSKQRSHMWASIYESLKQVVPWRRKQQTQKKFASKFDTV*






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