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Report for Sequence Feature Glyma06g13390

Feature Type:gene_model
Chromosome:Gm06
Start:10526396
stop:10528936
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g13390
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G10955AT Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein | chr4:6713778-6715372 REVERSE LENGTH=350 SoyBaseE_val: 1.00E-77ISS
GO:0006629GO-bp Annotation by Michelle Graham. GO Biological Process: lipid metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004806GO-mf Annotation by Michelle Graham. GO Molecular Function: triglyceride lipase activity SoyBaseN/AISS
UniRef100_F1AM72UniRef Annotation by Michelle Graham. Most informative UniRef hit: Triacylglycerol lipase 3 n=2 Tax=Arachis hypogaea RepID=F1AM72_ARAHY SoyBaseE_val: 5.00E-92ISS
UniRef100_UPI00023395F3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023395F3 related cluster n=1 Tax=unknown RepID=UPI00023395F3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g13390
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g13390 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g13390
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g13390
>Glyma06g13390.2   sequence type=CDS   gene model=Glyma06g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTATCAGAGCCTATCCATGAATCCTTATGTGTTTCAGGGCCTTCATGTCTCACTTACGTTGACTGGAATTGCGCATCTTTCAGAAGAGCTGTGATAGCAAGCCTAGTCCAGGGAGTGTACATCTTAGAACACGACCGCCAGAAGAACCGGCTCGGAACCAAATCCCTTTCTCCTCCCTGGTGGGAATTCTTCCATTTTCATCTTCACAATGTGCTTGTAGATAGTGCTGACTTCTCCATGTTTGGTGCCATCCTAGAACTGAGATTGCCACCCAATTACCCCAAAACTTTTGCTCTCAACACTCCAAAATATGTTATTGCATTCCGAGTCAGAGCAGAAACAAGGTCAAGGGACATCCTCTTAGACCTTAAATGCATAGTTAACAAAATACACAAGAGTTTCAGATTTGAACTCGCCATGCATTCATTTCAGAACACGGTGGATGTAGCTGGAGCTGACAATGAAAAAAACATGGCTAAAAAGGGTTATAATCTTCCAACATACCTCTTCAATTCTCCTTTTACATCAGCTCCATTAGAAAGGATTAATCATCAGAAAATCACTCAAGGAATCCACATTGCTAGTAGTGTTATGAAAGTTGGTATTTCTGCTGCTCTTAAGGGTCATCATCATCATCATGATCACACTAGTCATGATGAGCATGATGATCCGTTTGCTGAGTTGTCTACATGGGTGCCTCACCTGTTTGTGAACCCTGGTGATCATATATGTTCAGGGTACATTAACTATTTTGCAGAGGGAGAAGTGGAGAAAATTGGAGCTCGGAAAATTGAAAAGATTGCCACTAAGTGTACTTTGGAGAGTTTACTATCAGATGCTTTGGACAGAAATTCAGAACCGTTGCATCTGCTTCCCTCATTAGAGCTAAATATAAATATGGGTCACACGTCAGGTTTCAGAGCAGCACATGGAATTGAACAATGGTGGGATCCTCATTTACGATTTAAGTCCTTGATGTACCTTTACAAATAG
Predicted protein sequences of Glyma06g13390
>Glyma06g13390.2   sequence type=predicted peptide   gene model=Glyma06g13390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSEPIHESLCVSGPSCLTYVDWNCASFRRAVIASLVQGVYILEHDRQKNRLGTKSLSPPWWEFFHFHLHNVLVDSADFSMFGAILELRLPPNYPKTFALNTPKYVIAFRVRAETRSRDILLDLKCIVNKIHKSFRFELAMHSFQNTVDVAGADNEKNMAKKGYNLPTYLFNSPFTSAPLERINHQKITQGIHIASSVMKVGISAALKGHHHHHDHTSHDEHDDPFAELSTWVPHLFVNPGDHICSGYINYFAEGEVEKIGARKIEKIATKCTLESLLSDALDRNSEPLHLLPSLELNINMGHTSGFRAAHGIEQWWDPHLRFKSLMYLYK*






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