Report for Sequence Feature Glyma06g13300
Feature Type: gene_model
Chromosome: Gm06
Start: 10455468
stop: 10463303
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g13300
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G53440 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:21683679-21687970 REVERSE LENGTH=1181
SoyBase E_val: 7.00E-100 ISS
GO:0000226 GO-bp
Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization
SoyBase N/A ISS
GO:0000911 GO-bp
Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation
SoyBase N/A ISS
GO:0006635 GO-bp
Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation
SoyBase N/A ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0009630 GO-bp
Annotation by Michelle Graham. GO Biological Process: gravitropism
SoyBase N/A ISS
GO:0016558 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein import into peroxisome matrix
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1KAR2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAR2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g13300
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g13300
Paralog Evidence Comments
Glyma04g41520 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g13300 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g127600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g13300
Coding sequences of Glyma06g13300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g13300.1 sequence type=CDS gene model=Glyma06g13300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCCGCGCAGTTCGAAGCACAAATCGAGCAAGCACAGTTCGCGCGACGCGAGGGAGCACTCCGACTCGGAGCGAGATTCCGGCGCCAAGGATCGGAGGAGCAAGGAGGAGAGTGGCGGCGGCGCGAAGAAGGATTCGAGTTCCGCGGAGAAGCGGAGGCTGGATTCGAAGGACGCGCACGGGAACGGGGAGTATTCCGACGAGTACGCGTCGTCGTCGAAGCGGCGCAAAGACGGAGGCGGCGGCGGGGGAGACCGGTGGAATGGTGGCGAGGAGGGATCGAAGAAGTCGAAGACGGCGGGGGATTCGAAGAGCAGGAGGAGGGACGGGAGCGTGGGAGTGTACGGCGAGGGCGAGGAGGTGAAGAAGAGTAGCGGGAAAGGGGATGGGAAGCATAGGGATTCGGCATCGGGGCGAGGCAGGGAGGGTGCGGCGGAGAAGGAGAAGGAGAAAGAGAGGAAATTCAAAGAAGGTGGTAGGAGTGAGGAATCGGTTGATGAGCAAGAGCAACGTGTTTCCAAGCAGGTCTTTGAAATTAATGAATCAAAGAAAATTGATGAGTTGCGAAGCCCTGAACCTGATAATCAGCTTGAGAGGCGAATGAGAAAGAAGAGGGACGACTATAGTGATGGTGACAAGCATCAAGATAATGTTGAAGATGGTTATGATAGACATTTGTCTTCTAGGGATGACATTGCCAAGGATGGAAAAAAGAAGGATGATAGGCGAAAAGAGGAGAAATATAGAGACAAATATAGAGAAGAAATAGGCAGGGAGAACAAACATCGACATGACAAGCAACGTGATGAGCGCCCTGCTAAAGATCATACTACCATTAGGTCTGATGATAAACATGCTAGGGAAGAAAAGAACAGCCTAGAGTCACGGCAAAAGAGAACCAAGCTTCCAGAGAGTGACAAGGACCATAATCGCGATGCGGATCGTGATTTGGAATCTGTTCGGGATCGAGAACGCCACAGTGAACGCGATCGTGATTATGATATTGACAGGGATCATGATTATGACAGAGATCGAGATTGGGACTGGGATCGAGATCATGATCGTGATCGAGACAGGGATCGTGACCGTCGCCGTGATCGTGATGGGTCACATGTGGATGATAGAAGTGGTAGAGGCAAAGAGAGTGGAACAAAGAAAAGGACTTTGGATGATCGCGATGATTATAGTGACTCTAAATCTAGAGCTGTTAAGAGCTACTATCTTGATTCTGATAAGAGGAGTTTGAGCACCAGCAGAGCTGAATCTGATGTTGACAGAGGAAGATCTCAACCTCAACAAGCTCATGCAGATTCATCTGGAACTAGCAATAAACACAGATCTTCTCCTGCCTCAAATACACACATTGGCAAAGATGACTATAGAAATGCAAAAGCTGAAGATTCAAAGTACAGAGACCCTTCAGTAGAACAGAGAACCAAAGGCTCAAGGGAGGGTTACTCTGGGACATCAGATAGAGGTTCTAAATACAAATTAATGGAAAAACCCATTAAAATAGATGAATTTCCTGCTGGAGACTTGTCAACTGAAAGATCTTCCAGTGCCAAGGCTTCTCCTGGGGCCCTGATGGAAAGATCTCCATCATCAACAAGCATTGAGCGCAGACTTGGCAGGGAGTCTACTCTAGAGAAACCGCTCTTGGATGAGCCCTCTCAAGCAGATTCATCTTTATATGGTAGGACTAATCAGAGCAATGCACCATTGATTTCACCTCCTCCTGGTTTCAGGGCTACCTTAGATAGACCTTATATGGGTTCTTTAGAGGATGATGTTAGAGATAACTCTAATTCACGATACAGAAGAAGTAGTGAACCTGGATTTGGAAGAGGACATGGTGGCAATTCCTGGAGGGCAGTTCCAAACTGGAATTCACCAGTACCAAATGGGTATGTTCCCTTCCCACCTGGGCCAGCTCATGGAGGTTTTCAAACAATGGTGCCACAGTTTACATCTCAACCTCTCTTTGGTGTTAGGCCTCCTATGGAAGTTAACCATGCTGGCATTCCTTATCATATTGCTGATGCTGACAGATTTCCAGGTCATTTGCGCCCACCACTTGGGTGGCCAAATTTGATGGATGGTACAGGAGCTGCTCATTTGCATGGATGGGATAACAATAATGGTGTCTTCAGAGATGATCCTCACATGTATGGTGGTTCTGATTGGGACAGGAACAGGCATTCGACTAATAGTCATGGATGGGAATCTGGTTCAGAGACTTGGAAAGAGCAGAGTTGTGATTCAAAGAAGGAATTGCCTTCCCCTGCCTACAAAGATGAATCAGTTCCTGCCCTGGTTGATAATGGTCTGAGTGATCAGACAAGTCAAATGTCTCAGGATGAACATAACCGGGATGAACTTGCTGAGAAATCTCCTGAAAGAAAGTTGTCCAGTCTCACTTCTCCAGCAGAAGTACCATTGAACTCTTCATCCTCAACTGTTCTTGAAAAGGTGCCTGATACTTCGATGCCAAGTGACAATACTTCCCTCTTCAGCCGTTTCTACCTTTCCAAACTTGACATTTCGGTGGACTTAGTACTGCCAGAGTTGTATGACCAGTGTATGTGTGCTTTGAATATGGACAAGAATGCTTCAGTTGATGCAGTTGCCAGTACAGAACTATTATTGAAGAATGGATCAAGAACACGACAGAAATATGCTGCCACCTTATCAAGGCGTTCACCTTTTCCAGAAATTGATAATTCTATCTTCCAGAGAGCCATAGATCTTTACAAGAAGCACAGGGTGAACCTGCCTAACAAGAGGGAGGTAGATGATACTGTGGTATTCCACCAGATGCAAGTGGATGAGTCATTTCCTGTTCCTAATTTGGAGAATGGCCATGTTTCTGTCTCAGCATGCAATGGGATAAAAGATGTGCCAATGCCTACATTAGAATCAGACAAAGTGGAAACTACATCTCCTGCAAAGGAGCAATTGGAAGGGATCAATCAAACCTACATCCAAATGGAGCAAGATCATGACAAAACTGGCATGTCTAGCCCATCTTCTAGTCGTGTGAACCAAGAAGAAACTGTAGCAGGTTTGCAAGAGAAAGAGCCCAAAATCACTTATGATAAGGTGAATTCAGGGGATGCAGAAGAGGATTACTCCTTGGCAGCTAAAAATGAAGCTCAGTTGGCCCATACTTTGCACCAAGAGGGTGAAAACATAGATAGCGAAGCCAAAACTACTGGTTTTGCCCATTGTGCAGATGAAAAGCTGGGTTTTGGTGACACAAAGGTTAATCCTAATCCCTTAATTGTTGAGGATGGGTCTCCCAAAGCTTGTGATGCTTTGATGCCTGGTTCAAATGAGTCTGAGTCGCTAATTTTAAGCCGGATACATCATTCTCCTGAAAGTACACATTGA
Predicted protein sequences of Glyma06g13300
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g13300.1 sequence type=predicted peptide gene model=Glyma06g13300 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MPRSSKHKSSKHSSRDAREHSDSERDSGAKDRRSKEESGGGAKKDSSSAEKRRLDSKDAHGNGEYSDEYASSSKRRKDGGGGGGDRWNGGEEGSKKSKTAGDSKSRRRDGSVGVYGEGEEVKKSSGKGDGKHRDSASGRGREGAAEKEKEKERKFKEGGRSEESVDEQEQRVSKQVFEINESKKIDELRSPEPDNQLERRMRKKRDDYSDGDKHQDNVEDGYDRHLSSRDDIAKDGKKKDDRRKEEKYRDKYREEIGRENKHRHDKQRDERPAKDHTTIRSDDKHAREEKNSLESRQKRTKLPESDKDHNRDADRDLESVRDRERHSERDRDYDIDRDHDYDRDRDWDWDRDHDRDRDRDRDRRRDRDGSHVDDRSGRGKESGTKKRTLDDRDDYSDSKSRAVKSYYLDSDKRSLSTSRAESDVDRGRSQPQQAHADSSGTSNKHRSSPASNTHIGKDDYRNAKAEDSKYRDPSVEQRTKGSREGYSGTSDRGSKYKLMEKPIKIDEFPAGDLSTERSSSAKASPGALMERSPSSTSIERRLGRESTLEKPLLDEPSQADSSLYGRTNQSNAPLISPPPGFRATLDRPYMGSLEDDVRDNSNSRYRRSSEPGFGRGHGGNSWRAVPNWNSPVPNGYVPFPPGPAHGGFQTMVPQFTSQPLFGVRPPMEVNHAGIPYHIADADRFPGHLRPPLGWPNLMDGTGAAHLHGWDNNNGVFRDDPHMYGGSDWDRNRHSTNSHGWESGSETWKEQSCDSKKELPSPAYKDESVPALVDNGLSDQTSQMSQDEHNRDELAEKSPERKLSSLTSPAEVPLNSSSSTVLEKVPDTSMPSDNTSLFSRFYLSKLDISVDLVLPELYDQCMCALNMDKNASVDAVASTELLLKNGSRTRQKYAATLSRRSPFPEIDNSIFQRAIDLYKKHRVNLPNKREVDDTVVFHQMQVDESFPVPNLENGHVSVSACNGIKDVPMPTLESDKVETTSPAKEQLEGINQTYIQMEQDHDKTGMSSPSSSRVNQEETVAGLQEKEPKITYDKVNSGDAEEDYSLAAKNEAQLAHTLHQEGENIDSEAKTTGFAHCADEKLGFGDTKVNPNPLIVEDGSPKACDALMPGSNESESLILSRIHHSPESTH*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
