Glyma06g13250 - SoyBase

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Report for Sequence Feature Glyma06g13250

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10400343
stop:	10404345
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13250

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G04550	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF668) \| chr5:1303757-1305556 REVERSE LENGTH=599	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0042744	GO-bp	Annotation by Michelle Graham. GO Biological Process: hydrogen peroxide catabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05003	PFAM	Protein of unknown function (DUF668)	JGI		ISS
PF11961	PFAM	Domain of unknown function (DUF3475)	JGI		ISS
UniRef100_Q9LZ71	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g04550/T32M21_140 n=1 Tax=Arabidopsis thaliana RepID=Q9LZ71_ARATH	SoyBase	E_val: 0	ISS
UniRef100_UPI0002339B9C	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339B9C related cluster n=1 Tax=unknown RepID=UPI0002339B9C	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g13250

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13250

Paralog	Evidence	Comments
Glyma04g41580	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13250 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g127100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13250

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g13250

Limit To All Plant Sequences

>Glyma06g13250.2   sequence type=transcript   gene model=Glyma06g13250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAACTACAAGGGCCAGGACAAACACCAAAAAGAGCAACAAGGGGGAATATAAACATTATTTTTTCTTTTACTGGAATATATGTTAATTTTTCAGAGCAGGCAGAAATAAGAGCACCAAACCAGTATGCACTAGACCAAAGTGAATTACTGCAAGCTCAAACAGTCAACCCCACTCATTCTCCTTCTATTAGTGTGGGACAGAATAGTAAACGAAAGAAGAGCTATGGCACTGGATTTGTCAAGAGTATAGGTTTTCTCCATTCCTATATTAGCAATGGTTGCAGAATCATGGTTTCGTAGTCTGTGGAAGGCTCCTCGGAAGCATGATGCTAATTCTGAGAAGGTGGTCATTGAAGTATTAGCATTTGAAATAGCAAGCTTGATGTCCAAGCTAGTTAATTTATGGCAGTCTTTGAGTGATAAACAGATTGTTAGATTCAGGGAGGAAATCACAAATTCAGTGGGCATAAGAAAGCTTGTCTCAGATGATGATCATTTCATTGAACGTTTGATCTGTTTGGAGATACTTGAGAATATGGCACATGTGGCTGAGTCTGTGGCTAGGCTTGCTAAGAAATGCAGTGATCCAATTTTCAAAGGTTTTGGGAATGCCTTTTACGAGTTTATCACTACGGGAAGTGATCCATATGGGTGGGAATTCACTGGCAAGAAAATGGAAAAGAAGATTAAAAGGATGGAAAAGTTTATATCAACTAATGCAAGTTTGTATCAAGAGATGGAAGTGCTTGCTGATCTTGAGCAAACTTTTACAAGAGTGAAGGCTAATGGTGAGTCAGATGGTGTAACTTTAATGGAGTATCAGAAGAAGGTTGCATGGAAGAGGATGGAGGTGAAGCACTTACAGGATATTTCTTTGTGGAACAGGACATATGATTACACAATACTTCTTTTAGCAAGATCCTTATTCACAATATTCTGCAAGATCAACCATGTATTTGGACTTACAGAGATGGTGGATGTTGGCAGAACCACTAATTCAAGTGTCTTGAATTCGGATTTCATTTACAGAAGTCAATCGGTTTCTACAATATTGCAATCTTCATACCAACCATCACAGAATAATATTCCCAGGTTTTCTTCAGGACCCCTTAATGCTATTACTGCTAGATCAGGCCCAATTGGTCAAACAACAAATAAAACAAGCATTTCTCATTCAGGTCCTCTTGGTGACTCATCCACGAAGTCAGGCCCCATTTTAGAAAAGCATTCAACAAACGTCAATTTTTACTCAGGTCCTCTTGGAAGGAAATTCAATCCATCAGTCCCAGTTACCGGAAGAAAAAAAAAGAGTAAGATTTGGAAGTTTTATGGACACTCTGCTGCCATAAGTGGGAAGGAAACTAGCACAAGATCCAGTCGACTGACCCAAGTAGGACCTTTCAAAGGTTGTATGGCTTGGGACAGTTCCATATTCACTGACTGCCAGTCAAGTGCAAATGGTGTTCATTATGGAACGCAGAATCTCAAAGATATTAATTCAAACCCTCTTGGTCCTGGAAAAGTAGTTCATCATACTCAATCAGTCTTCAAACCTCTTTGCAAGCTATTTAATCCTCCACCTGAAACCCTTGGTGCTGCTGCTCTAGCACTGCACTATGCAAATGTTATCATTGTGATTGAGAAGCTAGCAGCTTCTTCACACTTGATTGGTCTGGATGCAAGAGATGACCTGTATAACATGTTACCAAGACGTGTGAGAGCTTCCCTTAAGGCCAAGCTAAAACCATATACCAAGACCCTGGCATCATCATCATCATCATCAATCTATGACCCAAGTCTAGCAGAAGAATGGAATGAAGCAATGTCAAGCATACTTGAATGGCTGGCACCACTTGCTCATAACATGATAAGATGGCAGTCTGAGAGAAGTTATGAACAGCAGAGCTTTATTTCCCGGACAAACGTGCTGCTAGTACAGACCCTTTACTTTGCAAATCAAGAAAAGACAGAAGAAGTAATTACTGAGCTTCTTGTGGGTCTAAATTATGTCTGGAAATATGGTAGGGAGCTCAATGCAAAAGCTCTGGCTGAGTGTGGCAGTTTTAGGGTAGACAATGAATATCCTAATCTGAATGGATGAATAATCTGTCTCAAGGTTGTGGCCATTTCCTACAGGAGTCCAGTTCCTTGCTAGAGATGAGAAACACGAACCATCAATCAGTCTTGTTAAATCAACAAATGTGAATCAAGTGCTAGCAGAATTATGAGAGAAGTACCTTTGTATTCATTATTGTGGAAATGTAGTATCAGAATGCGTACCTGGTGAGGAATTTTTTTTAATCATTTATCGTTAATTATCTTTGATGAGTTCCTAGCTGCTAGAACTTGGATAGCTGATCTCATCTGTGCAATGTTGGCCTTCTTTCCTTGATGAGTTCCTACTTCGTACGTGATGTTTAGAGTGTGCATATTTATGAGCATTATTACATATTAAATTGTATAGTTCTATCACGCTATGGTGAATGTTATTTCGCAATATCTTCTGAATTGCCAGTCAAGGAATTTGTCATCCTATTTATAGCAAGTACCATAATCTATTTTTCTTGTAAGTTGTATGCTAACATTGCTCAAAATTCAGACTGTCATTGTGTCTATATAGCTCATAGTTCCGTGATAGAAGCTATTATTACAAACCTATCCATTGGGGATTTGCTTATCTCAAACCCATACCTCCTATTTACGGAAAATTTTCTT

Coding sequences of Glyma06g13250

Limit To All Plant Sequences

>Glyma06g13250.1   sequence type=CDS   gene model=Glyma06g13250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCAGAATCATGGTTTCGTAGTCTGTGGAAGGCTCCTCGGAAGCATGATGCTAATTCTGAGAAGGTGGTCATTGAAGTATTAGCATTTGAAATAGCAAGCTTGATGTCCAAGCTAGTTAATTTATGGCAGTCTTTGAGTGATAAACAGATTGTTAGATTCAGGGAGGAAATCACAAATTCAGTGGGCATAAGAAAGCTTGTCTCAGATGATGATCATTTCATTGAACGTTTGATCTGTTTGGAGATACTTGAGAATATGGCACATGTGGCTGAGTCTGTGGCTAGGCTTGCTAAGAAATGCAGTGATCCAATTTTCAAAGGTTTTGGGAATGCCTTTTACGAGTTTATCACTACGGGAAGTGATCCATATGGGTGGGAATTCACTGGCAAGAAAATGGAAAAGAAGATTAAAAGGATGGAAAAGTTTATATCAACTAATGCAAGTTTGTATCAAGAGATGGAAGTGCTTGCTGATCTTGAGCAAACTTTTACAAGAGTGAAGGCTAATGGTGAGTCAGATGGTGTAACTTTAATGGAGTATCAGAAGAAGGTTGCATGGAAGAGGATGGAGGTGAAGCACTTACAGGATATTTCTTTGTGGAACAGGACATATGATTACACAATACTTCTTTTAGCAAGATCCTTATTCACAATATTCTGCAAGATCAACCATGTATTTGGACTTACAGAGATGGTGGATGTTGGCAGAACCACTAATTCAAGTGTCTTGAATTCGGATTTCATTTACAGAAGTCAATCGGTTTCTACAATATTGCAATCTTCATACCAACCATCACAGAATAATATTCCCAGGTTTTCTTCAGGACCCCTTAATGCTATTACTGCTAGATCAGGCCCAATTGGTCAAACAACAAATAAAACAAGCATTTCTCATTCAGGTCCTCTTGGTGACTCATCCACGAAGTCAGGCCCCATTTTAGAAAAGCATTCAACAAACGTCAATTTTTACTCAGGTCCTCTTGGAAGGAAATTCAATCCATCAGTCCCAGTTACCGGAAGAAAAAAAAAGAGTAAGATTTGGAAGTTTTATGGACACTCTGCTGCCATAAGTGGGAAGGAAACTAGCACAAGATCCAGTCGACTGACCCAAGTAGGACCTTTCAAAGGTTGTATGGCTTGGGACAGTTCCATATTCACTGACTGCCAGTCAAGTGCAAATGGTGTTCATTATGGAACGCAGAATCTCAAAGATATTAATTCAAACCCTCTTGGTCCTGGAAAAGTAGTTCATCATACTCAATCAGTCTTCAAACCTCTTTGCAAGCTATTTAATCCTCCACCTGAAACCCTTGGTGCTGCTGCTCTAGCACTGCACTATGCAAATGTTATCATTGTGATTGAGAAGCTAGCAGCTTCTTCACACTTGATTGGTCTGGATGCAAGAGATGACCTGTATAACATGTTACCAAGACGTGTGAGAGCTTCCCTTAAGGCCAAGCTAAAACCATATACCAAGACCCTGGCATCATCATCATCATCATCAATCTATGACCCAAGTCTAGCAGAAGAATGGAATGAAGCAATGTCAAGCATACTTGAATGGCTGGCACCACTTGCTCATAACATGATAAGATGGCAGTCTGAGAGAAGTTATGAACAGCAGAGCTTTATTTCCCGGACAAACGTGCTGCTAGTACAGACCCTTTACTTTGCAAATCAAGAAAAGACAGAAGAAGTAATTACTGAGCTTCTTGTGGGTCTAAATTATGTCTGGAAATATGGTAGGGAGCTCAATGCAAAAGCTCTGGCTGAGTGTGGCAGTTTTAGGGTAGACAATGAATATCCTAATCTGAATGGATGA

>Glyma06g13250.2   sequence type=CDS   gene model=Glyma06g13250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGCAGAATCATGGTTTCGTAGTCTGTGGAAGGCTCCTCGGAAGCATGATGCTAATTCTGAGAAGGTGGTCATTGAAGTATTAGCATTTGAAATAGCAAGCTTGATGTCCAAGCTAGTTAATTTATGGCAGTCTTTGAGTGATAAACAGATTGTTAGATTCAGGGAGGAAATCACAAATTCAGTGGGCATAAGAAAGCTTGTCTCAGATGATGATCATTTCATTGAACGTTTGATCTGTTTGGAGATACTTGAGAATATGGCACATGTGGCTGAGTCTGTGGCTAGGCTTGCTAAGAAATGCAGTGATCCAATTTTCAAAGGTTTTGGGAATGCCTTTTACGAGTTTATCACTACGGGAAGTGATCCATATGGGTGGGAATTCACTGGCAAGAAAATGGAAAAGAAGATTAAAAGGATGGAAAAGTTTATATCAACTAATGCAAGTTTGTATCAAGAGATGGAAGTGCTTGCTGATCTTGAGCAAACTTTTACAAGAGTGAAGGCTAATGGTGAGTCAGATGGTGTAACTTTAATGGAGTATCAGAAGAAGGTTGCATGGAAGAGGATGGAGGTGAAGCACTTACAGGATATTTCTTTGTGGAACAGGACATATGATTACACAATACTTCTTTTAGCAAGATCCTTATTCACAATATTCTGCAAGATCAACCATGTATTTGGACTTACAGAGATGGTGGATGTTGGCAGAACCACTAATTCAAGTGTCTTGAATTCGGATTTCATTTACAGAAGTCAATCGGTTTCTACAATATTGCAATCTTCATACCAACCATCACAGAATAATATTCCCAGGTTTTCTTCAGGACCCCTTAATGCTATTACTGCTAGATCAGGCCCAATTGGTCAAACAACAAATAAAACAAGCATTTCTCATTCAGGTCCTCTTGGTGACTCATCCACGAAGTCAGGCCCCATTTTAGAAAAGCATTCAACAAACGTCAATTTTTACTCAGGTCCTCTTGGAAGGAAATTCAATCCATCAGTCCCAGTTACCGGAAGAAAAAAAAAGAGTAAGATTTGGAAGTTTTATGGACACTCTGCTGCCATAAGTGGGAAGGAAACTAGCACAAGATCCAGTCGACTGACCCAAGTAGGACCTTTCAAAGGTTGTATGGCTTGGGACAGTTCCATATTCACTGACTGCCAGTCAAGTGCAAATGGTGTTCATTATGGAACGCAGAATCTCAAAGATATTAATTCAAACCCTCTTGGTCCTGGAAAAGTAGTTCATCATACTCAATCAGTCTTCAAACCTCTTTGCAAGCTATTTAATCCTCCACCTGAAACCCTTGGTGCTGCTGCTCTAGCACTGCACTATGCAAATGTTATCATTGTGATTGAGAAGCTAGCAGCTTCTTCACACTTGATTGGTCTGGATGCAAGAGATGACCTGTATAACATGTTACCAAGACGTGTGAGAGCTTCCCTTAAGGCCAAGCTAAAACCATATACCAAGACCCTGGCATCATCATCATCATCATCAATCTATGACCCAAGTCTAGCAGAAGAATGGAATGAAGCAATGTCAAGCATACTTGAATGGCTGGCACCACTTGCTCATAACATGATAAGATGGCAGTCTGAGAGAAGTTATGAACAGCAGAGCTTTATTTCCCGGACAAACGTGCTGCTAGTACAGACCCTTTACTTTGCAAATCAAGAAAAGACAGAAGAAGTAATTACTGAGCTTCTTGTGGGTCTAAATTATGTCTGGAAATATGGTAGGGAGCTCAATGCAAAAGCTCTGGCTGAGTGTGGCAGTTTTAGGGTAGACAATGAATATCCTAATCTGAATGGATGA

Predicted protein sequences of Glyma06g13250

Limit To All Plant Sequences

>Glyma06g13250.1   sequence type=predicted peptide   gene model=Glyma06g13250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAESWFRSLWKAPRKHDANSEKVVIEVLAFEIASLMSKLVNLWQSLSDKQIVRFREEITNSVGIRKLVSDDDHFIERLICLEILENMAHVAESVARLAKKCSDPIFKGFGNAFYEFITTGSDPYGWEFTGKKMEKKIKRMEKFISTNASLYQEMEVLADLEQTFTRVKANGESDGVTLMEYQKKVAWKRMEVKHLQDISLWNRTYDYTILLLARSLFTIFCKINHVFGLTEMVDVGRTTNSSVLNSDFIYRSQSVSTILQSSYQPSQNNIPRFSSGPLNAITARSGPIGQTTNKTSISHSGPLGDSSTKSGPILEKHSTNVNFYSGPLGRKFNPSVPVTGRKKKSKIWKFYGHSAAISGKETSTRSSRLTQVGPFKGCMAWDSSIFTDCQSSANGVHYGTQNLKDINSNPLGPGKVVHHTQSVFKPLCKLFNPPPETLGAAALALHYANVIIVIEKLAASSHLIGLDARDDLYNMLPRRVRASLKAKLKPYTKTLASSSSSSIYDPSLAEEWNEAMSSILEWLAPLAHNMIRWQSERSYEQQSFISRTNVLLVQTLYFANQEKTEEVITELLVGLNYVWKYGRELNAKALAECGSFRVDNEYPNLNG*

>Glyma06g13250.2   sequence type=predicted peptide   gene model=Glyma06g13250   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAESWFRSLWKAPRKHDANSEKVVIEVLAFEIASLMSKLVNLWQSLSDKQIVRFREEITNSVGIRKLVSDDDHFIERLICLEILENMAHVAESVARLAKKCSDPIFKGFGNAFYEFITTGSDPYGWEFTGKKMEKKIKRMEKFISTNASLYQEMEVLADLEQTFTRVKANGESDGVTLMEYQKKVAWKRMEVKHLQDISLWNRTYDYTILLLARSLFTIFCKINHVFGLTEMVDVGRTTNSSVLNSDFIYRSQSVSTILQSSYQPSQNNIPRFSSGPLNAITARSGPIGQTTNKTSISHSGPLGDSSTKSGPILEKHSTNVNFYSGPLGRKFNPSVPVTGRKKKSKIWKFYGHSAAISGKETSTRSSRLTQVGPFKGCMAWDSSIFTDCQSSANGVHYGTQNLKDINSNPLGPGKVVHHTQSVFKPLCKLFNPPPETLGAAALALHYANVIIVIEKLAASSHLIGLDARDDLYNMLPRRVRASLKAKLKPYTKTLASSSSSSIYDPSLAEEWNEAMSSILEWLAPLAHNMIRWQSERSYEQQSFISRTNVLLVQTLYFANQEKTEEVITELLVGLNYVWKYGRELNAKALAECGSFRVDNEYPNLNG*

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