Glyma06g13240 - SoyBase

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Report for Sequence Feature Glyma06g13240

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10390072
stop:	10396660
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G52210	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr3:19367035-19369293 FORWARD LENGTH=354	SoyBase	E_val: 4.00E-165	ISS
GO:0006370	GO-bp	Annotation by Michelle Graham. GO Biological Process: 7-methylguanosine mRNA capping	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12189	Panther	MRNA (GUANINE-7-)METHYLTRANSFERASE	JGI		ISS
PF03291	PFAM	mRNA capping enzyme	JGI		ISS
UniRef100_G7J6T6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA cap guanine-N7 methyltransferase n=1 Tax=Medicago truncatula RepID=G7J6T6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KAQ3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAQ3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g13240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13240

Paralog	Evidence	Comments
Glyma04g41590	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g127000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g13240

Limit To All Plant Sequences

>Glyma06g13240.2   sequence type=transcript   gene model=Glyma06g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCAACCCAAAGAAAAAAAATAAACCTACTTTGTAACTTATCGAACTGAGCTAAATTGTCCGAATTAGAGCTAAACCCGACCCATGCTCAATCCTAATATAACCTATTGTAATGGTCCTCCTCTTTTTATAAGAGTGATTATCATTGTAAAATAGGGTATTTACTCTTTTACTGTAATTTGAGGAATGTTTATTTGGGGAAAATTTAATGTGGAAATGTGGTCATAGGCGAGGGTGTTGGTGGAGTGTTGTAGTGTGAAGAAGAGGAAGAATGAGTCAACCGACACAGCAGCGCCTCTATGATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACGGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCACAAATTGGCCACTATATTGGAATTGATGCGCCTTCGTCTGGGATAGACCAAATGCGAGAAACTTGGGAGACTCACAGGAAATCCTACACTGCCGAGTTCTTTGAGCTTGACCCTTGCACGGAGAATATAGAAACGCATTTGGAGGAGAAGACCAACATGACTGATGTTGTCTGCTGTTTGCAGCATTTGCAGTTGTGTTTTGAGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGGTTAGTTTTGCATTCTCTGTAGGGCACTGATCCTCCCAAATCCTTAAAATATATTGTTTGTTATTAGCAGTTTTGGAGTTTGAAATACTATTTATTGAATTTAATTTTTGTGATTGTTTCCGTAAGAGCACAATTAGCAGGCCTGTTAACACACTATGTTCCAAACCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCTGCTATTGGGCTGGGCAAAATAAGCGAACAAAAAGGGATATTGGGCCCAGGTCCTGCAGATTTACGTTTTCCGGAAGCACTTTGAAAGTTCTACTGAAGCTATATGTTTAGCCGTTTAGGTAATGATGCATTGCAATTAGTATTTTATTGGCAAATGACAAGCAAAAAAACAGAATGCAGTTAGGTGTGTTTACATCTTTTTTAAACGGTAAAGGTTAGGGTAGGTGTTTTTCTTTTGACATGTAGTCAATGTGAACGGATTAGTTAACTTTACCATATGTTTTTACACATTGTACTTGTTAGCTTTTCTTCGAGTCTTCTGTTAAAAGGAGTCTCAAAAACAGTATAATTAAATTTAAAATGTAATGATCAACAAGTTTTAAACAATTTCACCTTCTTCGAAATTGGGATGACAAGTTGACAATGAGTCAATATTGCTAGTCTTATAGTATTTCATTTCTGTTTTGAATTAGAAATGAACGATGGTTAGGATTTTTGCGAGAACAGAACCCGTTGTCTTCAACCGTGTGTAATAATATTTATATTTGCATTAGCGT

>Glyma06g13240.3   sequence type=transcript   gene model=Glyma06g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCCAACCCAAAGAAAAAAAATAAACCTACTTTGTAACTTATCGAACTGAGCTAAATTGTCCGAATTAGAGCTAAACCCGACCCATGCTCAATCCTAATATAACCTATTGTAATGGTCCTCCTCTTTTTATAAGAGTGATTATCATTGTAAAATAGGGTATTTACTCTTTTACTGTAATTTGAGGAATGTTTATTTGGGGAAAATTTAATGTGGAAATGTGGTCATAGGCGAGGGTGTTGGTGGAGTGTTGTAGTGTGAAGAAGAGGAAGAATGAGTCAACCGACACAGCAGCGCCTCTATGATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACGGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCACAAATTGGCCACTATATTGGAATTGATGCGCCTTCGTCTGGGATAGACCAAATGCGAGAAACTTGGGAGACTCACAGGAAATCCTACACTGCCGAGTTCTTTGAGCTTGACCCTTGCACGGAGAATATAGAAACGCATTTGGAGGAGAAGACCAACATGACTGATGTTGTCTGCTGTTTGCAGCATTTGCAGTTGTGTTTTGAGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGAGCACAATTAGCAGGCCTGTTAACACACTATGTTCCAAACCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGGTGATGTGCTAATATTTTTTTTATATCATGTTATTGTTTATAAGTTTCTTGGTTTCACTATCACCTATTATTTATGAAGATACTCTGATACTGTACTTTCCACTCCAACACAGGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCTGCTATTGGGCTGGGCAAAATAAGCGAACAAAAAGGGATATTGGGCCCAGGTCCTGCAGATTTACGTTTTCCGGAAGCACTTTGAAAGTTCTACTGAAGCTATATGTTTAGCCGTTTAGGTAATGATGCATTGCAATTAGTATTTTATTGGCAAATGACAAGCAAAAAAACAGAATGCAGTTAGGTGTGTTTACATCTTTTTTAAACGGTAAAGGTTAGGGTAGGTGTTTTTCTTTTGACATGTAGTCAATGTGAACGGATTAGTTAACTTTACCATATGTTTTTACACATTGTACTTGTTAGCTTTTCTTCGAGTCTTCTGTTAAAAGGAGTCTCAAAAACAGTATAATTAAATTTAAAATGTAATGATCAACAAGTTTTAAACAATTTCACCTTCTTCGAAATTGGGATGACAAGTTGACAATGAGTCAATATTGCTAGTCTTATAGTATTTCATTTCTGTTTTGAATTAGAAATGAACGATGGTTAGGATTTTTGCGAGAACAGAACCCGTTGTCTTCAACCGTGTGTAATAATATTTATATTTGCATTAGCGT

Coding sequences of Glyma06g13240

Limit To All Plant Sequences

>Glyma06g13240.1   sequence type=CDS   gene model=Glyma06g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAACCGACACAGCAGCGCCTCTATGATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACGGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCACAAATTGGCCACTATATTGGAATTGATGCGCCTTCGTCTGGGATAGACCAAATGCGAGAAACTTGGGAGACTCACAGGAAATCCTACACTGCCGAGTTCTTTGAGCTTGACCCTTGCACGGAGAATATAGAAACGCATTTGGAGGAGAAGACCAACATGACTGATGTTGTCTGCTGTTTGCAGCATTTGCAGTTGTGTTTTGAGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGAGCACAATTAGCAGGCCTGTTAACACACTATGTTCCAAACCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGGTCTCTACACCACGTTTATATTTCAAAAACCTGACCCGGAAATTGCACCCCCGATTCCTACTCCGTTATTGCCAGATGTTAGTTATAATCTTGATGAGGTAACCATTTGGCGAGATGATGAAGTGATAAATGGGCATGTAGTAGAACCTGCTATTGGGCTGGGCAAAATAAGCGAACAAAAAGGGATATTGGGCCCAGGTCCTGCAGATTTACGTTTTCCGGAAGCACTTTGA

>Glyma06g13240.2   sequence type=CDS   gene model=Glyma06g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAACCGACACAGCAGCGCCTCTATGATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACGGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCACAAATTGGCCACTATATTGGAATTGATGCGCCTTCGTCTGGGATAGACCAAATGCGAGAAACTTGGGAGACTCACAGGAAATCCTACACTGCCGAGTTCTTTGAGCTTGACCCTTGCACGGAGAATATAGAAACGCATTTGGAGGAGAAGACCAACATGACTGATGTTGTCTGCTGTTTGCAGCATTTGCAGTTGTGTTTTGAGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGGTTAGTTTTGCATTCTCTGTAG

>Glyma06g13240.3   sequence type=CDS   gene model=Glyma06g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGTCAACCGACACAGCAGCGCCTCTATGATTTCGCCAAAATGGCTCTCATCAACATCTTCGTTCACCCCTACGCCACGGTGTGCGACTTGTACTGTGGAGATGCCGACGCTGATAAATGGGCCCACGCACAAATTGGCCACTATATTGGAATTGATGCGCCTTCGTCTGGGATAGACCAAATGCGAGAAACTTGGGAGACTCACAGGAAATCCTACACTGCCGAGTTCTTTGAGCTTGACCCTTGCACGGAGAATATAGAAACGCATTTGGAGGAGAAGACCAACATGACTGATGTTGTCTGCTGTTTGCAGCATTTGCAGTTGTGTTTTGAGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGGGCCAAGTACCAGAGGAATGTTGAAGCCTATCACAACAAAAGCAGCAGCATGAAGCCAAACATTGTTCCCAACTGCATCCGGACAGAGAATTACATGATTACTTTTGAAGTTGAAGAAGAAAAGTTTCCTTTATTTGGAAAGAAATACCAGCTAAAATTTGCTAATGATGTCTCTGCTGAAACCTATTGCTTGGTTCATTTTCCAAGTTTCATCAGGTTGGCCAGGGAAGCTGGTCTTGAGTACGTGGAGATTCAAAATTTGACCGAGTTTTATGATGACAACAGAGCACAATTAGCAGGCCTGTTAACACACTATGTTCCAAACCTCTTGGATCCTAGGGGGAGACTTCTTCCTCGTTCATATGATGCACTAGGTGATGTGCTAATATTTTTTTTATATCATGTTATTGTTTATAAGTTTCTTGGTTTCACTATCACCTATTATTTATGA

Predicted protein sequences of Glyma06g13240

Limit To All Plant Sequences

>Glyma06g13240.1   sequence type=predicted peptide   gene model=Glyma06g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQPTQQRLYDFAKMALINIFVHPYATVCDLYCGDADADKWAHAQIGHYIGIDAPSSGIDQMRETWETHRKSYTAEFFELDPCTENIETHLEEKTNMTDVVCCLQHLQLCFETEEKARKLLHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITFEVEEEKFPLFGKKYQLKFANDVSAETYCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNRAQLAGLLTHYVPNLLDPRGRLLPRSYDALGLYTTFIFQKPDPEIAPPIPTPLLPDVSYNLDEVTIWRDDEVINGHVVEPAIGLGKISEQKGILGPGPADLRFPEAL*

>Glyma06g13240.2   sequence type=predicted peptide   gene model=Glyma06g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQPTQQRLYDFAKMALINIFVHPYATVCDLYCGDADADKWAHAQIGHYIGIDAPSSGIDQMRETWETHRKSYTAEFFELDPCTENIETHLEEKTNMTDVVCCLQHLQLCFETEEKARKLLHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITFEVEEEKFPLFGKKYQLKFANDVSAETYCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNRLVLHSL*

>Glyma06g13240.3   sequence type=predicted peptide   gene model=Glyma06g13240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSQPTQQRLYDFAKMALINIFVHPYATVCDLYCGDADADKWAHAQIGHYIGIDAPSSGIDQMRETWETHRKSYTAEFFELDPCTENIETHLEEKTNMTDVVCCLQHLQLCFETEEKARKLLHNVSSLLKPGGYFLGITPDSSTIWAKYQRNVEAYHNKSSSMKPNIVPNCIRTENYMITFEVEEEKFPLFGKKYQLKFANDVSAETYCLVHFPSFIRLAREAGLEYVEIQNLTEFYDDNRAQLAGLLTHYVPNLLDPRGRLLPRSYDALGDVLIFFLYHVIVYKFLGFTITYYL*

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