SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G04520 | AT | Annotation by Michelle Graham. TAIR10: Protein of unknown function DUF455 | chr5:1290012-1291063 REVERSE LENGTH=291 | SoyBase | E_val: 1.00E-167 | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| PTHR21496 | Panther | FERREDOXIN-RELATED | JGI | ISS | |
| PF04305 | PFAM | Protein of unknown function (DUF455) | JGI | ISS | |
| UniRef100_I1KAQ0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAQ0_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q9LZ73 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3-oxoacyl-[acyl-carrier-protein] synthase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9LZ73_ARATH | SoyBase | E_val: 6.00E-165 | ISS |
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Glyma06g13230 not represented in the dataset |
Glyma06g13230 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g126900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g13230.2 sequence type=transcript gene model=Glyma06g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATTTGGCCCTCCTTGTAGTGTGTCTTTTCATTCAATTCACATGCCACCCTAAACATTTATTGGCAAATATTTATATGTATAATGCATTTCATGCAGGATATAATAGCACGTTTTGGCAAGCAAGAGTCAATGCCTAGAGAGTTCTTTACAGATTTTGTGAAGGTGGCACAGGATGAAGGGCGACACTTCAGTCTTCTTGCTGCACGGCTTGAGGAGCTTGGTTCTTATTATGGAGCATTACCAGCTCATGATGGCCTTTGGGATTCTGCCACTGCTACTTCCAAGGATTTACTAGCACGATTAGCTGTTGAACACTGTGTCCACGAGGCCAGAGGACTTGATGTGGTGCCTACAACAATCTTACGATTCCGCAACAACGGTGATAACACTACGGCAGATTTACTAGAAAGTGTAGTTTATCCAGAAGAGATTACTCATTGTGCTGCTGGAGTGAAGTGGTTCAAGTATCTATGTGAGAGGTCTAGAAATCCAGCCTCAGAGCAAGAAGAAGAAAGTGGAAGTGGAAGTAGAACAGAGGAGCATGAAGCGATAGCAAAGTTTCATGCAATAGTGAGGGCATATTTTAGAGGACCTTTAAAACCACCGTTTAATGAGGCAGCCAGAAAAGAAGCTGGATTTGGTCCTCAGTGGTATGAACCGCTTGCAGTTAAAGAGGTTAATAGTATACCCAATTACTAACTTATGTCCTTAATTTAAGTAGCAGTTTTTTACTCCATACTTGAGCTGCTGTAACACAGAATAGAAGTTTTGAGCCTTTCATGTTTCAAAGTTTTTGTTTTTTCTTCTCTTTTTCGAAAGACCTTTGTTGCTGGCCGAAAGCATAAAGATAAGGTCAACAACTTATATGAATTTTAAACCATACGTTGATCAGAAAAAGATTGAGAAAGAAAAAACAATTTTAAAGGATGCTGTTTTTTAGTCATCTAAATATACAAGCGAT >Glyma06g13230.3 sequence type=transcript gene model=Glyma06g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high CACCGGCAGTACTAGTATTTTCTTAGAATAAAAAAGAAGGTGCAGTACAAAACATCCAGATAAGAGGATTCACTGAATCACACGTCCTTAGAAATATTAAAAAAAAAATCTAACTCAAACCCCAAAATAAACAACCATAGTCCGAAACTTGGATATCGTATCGAGGAGCTATGCCTATGGTCTCCCAGGAAGAAACCTTAGTGGAAGCGGCGCTCCGAGTTCTGAACACCGCCGACCCGTTCGAGAAGGCGCGACTCGGCGACTCGGTGGCTTCGCGGTGGCTCAATGGCGACATAGCAGAACCCTACGACCCTTCCGGCTCCGATCTCACGCTCCCTGATCGCCCCGCAAGACTATCCTCTGTCTGCACCGTTCTTCGTCCTCACCTTCTTCCAATCTTCAGTGTTCGGCGAAATGCTTCGTTGTGATTGAATAGAATAATAATAATAATAATGTGTTGGCAGGTGAAGTTGGTGGCGCCGAGCTTGATGCCGAAGCTGGGTAGAGCGGGCAGCTTGCAGAGCAGGATAGCCATTGTTCATAGCCTCACTCACACTGAAAGCTGGGCCATTGACTTGTCTTGGGATATAATAGCACGTTTTGGCAAGCAAGAGTCAATGCCTAGAGAGTTCTTTACAGATTTTGTGAAGGTGGCACAGGATGAAGGGCGACACTTCAGTCTTCTTGCTGCACGGCTTGAGGAGCTTGGTTCTTATTATGGAGCATTACCAGCTCATGATGGCCTTTGGGATTCTGCCACTGCTACTTCCAAGGATTTACTAGCACGATTAGCTGTTGAACACTGTGTCCACGAGGCCAGAGGACTTGATGTGGTGCCTACAACAATCTTACGATTCCGCAACAACGGTGATAACACTACGGCAGATTTACTAGAAAGTGTAGTTTATCCAGAAGAGATTACTCATTGTGCTGCTGGAGTGAAGTGGTTCAAGTATCTATGTGAGAGGTCTAGAAATCCAGCCTCAGAGCAAGAAGAAGAAAGTGGAAGTGGAAGTAGAACAGAGGAGCATGAAGCGATAGCAAAGTTTCATGCAATAGTGAGGGCATATTTTAGAGGACCTTTAAAACCACCGTTTAATGAGGCAGCCAGAAAAGAAGCTGGATTTGGTCCTCAGTGGTATGAACCGCTTGCAGTTAAAGAGGTTAATAGTATACCCAATTACTAACTTATGTCCTTAATTTAAGTAGCAGTTTTTTACTCCATACTTGAGCTGCTGTAACACAGAATAGAAGTTTTGAGCCTTTCATGTTTCAAAGTTTTTGTTTTTTCTTCTCTTTTTCGAAAGACCTTTGTTGCTGGCCGAAAGCATAAAGATAAGGTCAACAACTTATATGAATTTTAAACCATACGTTGATCAGAAAAAGATTGAGAAAGAAAAAACAATTTTAAAGGATGCTGTTTTTTAGTCATCTAAATATACAAGCGAT
>Glyma06g13230.1 sequence type=CDS gene model=Glyma06g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCCTATGGTCTCCCAGGAAGAAACCTTAGTGGAAGCGGCGCTCCGAGTTCTGAACACCGCCGACCCGTTCGAGAAGGCGCGACTCGGCGACTCGGTGGCTTCGCGGTGGCTCAATGGCGACATAGCAGAACCCTACGACCCTTCCGGCTCCGATCTCACGCTCCCTGATCGCCCCGCAAGACTATCCTCTGTGAAGTTGGTGGCGCCGAGCTTGATGCCGAAGCTGGGTAGAGCGGGCAGCTTGCAGAGCAGGATAGCCATTGTTCATAGCCTCACTCACACTGAAAGCTGGGCCATTGACTTGTCTTGGGATATAATAGCACGTTTTGGCAAGCAAGAGTCAATGCCTAGAGAGTTCTTTACAGATTTTGTGAAGGTGGCACAGGATGAAGGGCGACACTTCAGTCTTCTTGCTGCACGGCTTGAGGAGCTTGGTTCTTATTATGGAGCATTACCAGCTCATGATGGCCTTTGGGATTCTGCCACTGCTACTTCCAAGGATTTACTAGCACGATTAGCTGTTGAACACTGTGTCCACGAGGCCAGAGGACTTGATGTGGTGCCTACAACAATCTTACGATTCCGCAACAACGGTGATAACACTACGGCAGATTTACTAGAAAGTGTAGTTTATCCAGAAGAGATTACTCATTGTGCTGCTGGAGTGAAGTGGTTCAAGTATCTATGTGAGAGGTCTAGAAATCCAGCCTCAGAGCAAGAAGAAGAAAGTGGAAGTGGAAGTAGAACAGAGGAGCATGAAGCGATAGCAAAGTTTCATGCAATAGTGAGGGCATATTTTAGAGGACCTTTAAAACCACCGTTTAATGAGGCAGCCAGAAAAGAAGCTGGATTTGGTCCTCAGTGGTATGAACCGCTTGCAGTTAAAGAGGTTAATAGTATACCCAATTACTAA >Glyma06g13230.2 sequence type=CDS gene model=Glyma06g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCATTTCATGCAGGATATAATAGCACGTTTTGGCAAGCAAGAGTCAATGCCTAGAGAGTTCTTTACAGATTTTGTGAAGGTGGCACAGGATGAAGGGCGACACTTCAGTCTTCTTGCTGCACGGCTTGAGGAGCTTGGTTCTTATTATGGAGCATTACCAGCTCATGATGGCCTTTGGGATTCTGCCACTGCTACTTCCAAGGATTTACTAGCACGATTAGCTGTTGAACACTGTGTCCACGAGGCCAGAGGACTTGATGTGGTGCCTACAACAATCTTACGATTCCGCAACAACGGTGATAACACTACGGCAGATTTACTAGAAAGTGTAGTTTATCCAGAAGAGATTACTCATTGTGCTGCTGGAGTGAAGTGGTTCAAGTATCTATGTGAGAGGTCTAGAAATCCAGCCTCAGAGCAAGAAGAAGAAAGTGGAAGTGGAAGTAGAACAGAGGAGCATGAAGCGATAGCAAAGTTTCATGCAATAGTGAGGGCATATTTTAGAGGACCTTTAAAACCACCGTTTAATGAGGCAGCCAGAAAAGAAGCTGGATTTGGTCCTCAGTGGTATGAACCGCTTGCAGTTAAAGAGGTTAATAGTATACCCAATTACTAA >Glyma06g13230.3 sequence type=CDS gene model=Glyma06g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTGTTGGCAGGTGAAGTTGGTGGCGCCGAGCTTGATGCCGAAGCTGGGTAGAGCGGGCAGCTTGCAGAGCAGGATAGCCATTGTTCATAGCCTCACTCACACTGAAAGCTGGGCCATTGACTTGTCTTGGGATATAATAGCACGTTTTGGCAAGCAAGAGTCAATGCCTAGAGAGTTCTTTACAGATTTTGTGAAGGTGGCACAGGATGAAGGGCGACACTTCAGTCTTCTTGCTGCACGGCTTGAGGAGCTTGGTTCTTATTATGGAGCATTACCAGCTCATGATGGCCTTTGGGATTCTGCCACTGCTACTTCCAAGGATTTACTAGCACGATTAGCTGTTGAACACTGTGTCCACGAGGCCAGAGGACTTGATGTGGTGCCTACAACAATCTTACGATTCCGCAACAACGGTGATAACACTACGGCAGATTTACTAGAAAGTGTAGTTTATCCAGAAGAGATTACTCATTGTGCTGCTGGAGTGAAGTGGTTCAAGTATCTATGTGAGAGGTCTAGAAATCCAGCCTCAGAGCAAGAAGAAGAAAGTGGAAGTGGAAGTAGAACAGAGGAGCATGAAGCGATAGCAAAGTTTCATGCAATAGTGAGGGCATATTTTAGAGGACCTTTAAAACCACCGTTTAATGAGGCAGCCAGAAAAGAAGCTGGATTTGGTCCTCAGTGGTATGAACCGCTTGCAGTTAAAGAGGTTAATAGTATACCCAATTACTAA
>Glyma06g13230.1 sequence type=predicted peptide gene model=Glyma06g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MPMVSQEETLVEAALRVLNTADPFEKARLGDSVASRWLNGDIAEPYDPSGSDLTLPDRPARLSSVKLVAPSLMPKLGRAGSLQSRIAIVHSLTHTESWAIDLSWDIIARFGKQESMPREFFTDFVKVAQDEGRHFSLLAARLEELGSYYGALPAHDGLWDSATATSKDLLARLAVEHCVHEARGLDVVPTTILRFRNNGDNTTADLLESVVYPEEITHCAAGVKWFKYLCERSRNPASEQEEESGSGSRTEEHEAIAKFHAIVRAYFRGPLKPPFNEAARKEAGFGPQWYEPLAVKEVNSIPNY* >Glyma06g13230.2 sequence type=predicted peptide gene model=Glyma06g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MHFMQDIIARFGKQESMPREFFTDFVKVAQDEGRHFSLLAARLEELGSYYGALPAHDGLWDSATATSKDLLARLAVEHCVHEARGLDVVPTTILRFRNNGDNTTADLLESVVYPEEITHCAAGVKWFKYLCERSRNPASEQEEESGSGSRTEEHEAIAKFHAIVRAYFRGPLKPPFNEAARKEAGFGPQWYEPLAVKEVNSIPNY* >Glyma06g13230.3 sequence type=predicted peptide gene model=Glyma06g13230 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MCWQVKLVAPSLMPKLGRAGSLQSRIAIVHSLTHTESWAIDLSWDIIARFGKQESMPREFFTDFVKVAQDEGRHFSLLAARLEELGSYYGALPAHDGLWDSATATSKDLLARLAVEHCVHEARGLDVVPTTILRFRNNGDNTTADLLESVVYPEEITHCAAGVKWFKYLCERSRNPASEQEEESGSGSRTEEHEAIAKFHAIVRAYFRGPLKPPFNEAARKEAGFGPQWYEPLAVKEVNSIPNY*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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