Report for Sequence Feature Glyma06g13220
Feature Type: gene_model
Chromosome: Gm06
Start: 10380956
stop: 10382508
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g13220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G06240 AT
Annotation by Michelle Graham. TAIR10: F-box family protein | chr3:1887336-1888619 FORWARD LENGTH=427
SoyBase E_val: 2.00E-36 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF00646 PFAM
F-box domain
JGI ISS
UniRef100_D3YBB5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Galactose oxidase n=1 Tax=Trifolium repens RepID=D3YBB5_TRIRP
SoyBase E_val: 1.00E-115 ISS
UniRef100_I1KAP9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAP9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g13220
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma06g13220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g126800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g13220
Coding sequences of Glyma06g13220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g13220.1 sequence type=CDS gene model=Glyma06g13220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGGGAAACAGTGGCAGAGGAGTAAGGGGAACGAAGAAGATCGCAATTCTGCCATGGGAATTGATAATTGAAATCTTGTTGAGGTTGCCGGTGAAATCTCTTGTTCGTTTCAAATGCGTATGCAAGTCATGGCTATGTCTCCTATCTGATCCACACTTTGCAACATCGCATTTTGAACAACCCTCCACACGCACGCACAGACTCATCTTCATCGTAGCACCTTCTTCTCCTCAAATCCGATCCATTGATTTCAACGCATCCCTCTACGATGATTCAGCTTGGGCTGCATTAAACCTCAACTTTCTGCGTCCCAATACGTATCACAATGTTCAGATCTTAGGTTCCTGCAGAGGCTTTCTGCTTCTGAACGGCTGTCAAAGTCTCTGGGCGTGGAATCCATCCACAGGGGTCTACAAAAAACTATCTTCCTCGCCTATTGGGTCCAATTTGATGCGATCCGTGTTTTATACGTTTCTCTATGGTTTTGGATATGACTCTTCAACTGATGATTACTTGGTGGTCAAGGCTTCTTACAGCCCAATCTCGCGTTATAACGCCACCACCCGATTCGAGTTTCTCTCGCTGAGAGCTAATGCGTGGACAGATATTGAGGCTGCCCATTTGTCTTACATGAACTCCTCTCAGGGTATCGGAGCAGGATTGTTTTTGAATGGTGCTATTCATTGGTTAGTTTTTTGTTGTGATGTATCACTCGATGTCGTTGTTGCCTTTGATTTGACTGAAAGGAGTTTCTCGGAAATACCTCTGCCGGTTGATTTTTCGGAGGAGGATGATGACTTTGATTCTTGCGAATTGGGGTTGGGGGTGCTCGGAGAATTGCTTAGTATAAGTGCTGTGGGACGGAACCACTCAGTACAAGTATGGGTAATGAAGGAATACAAAGTGCACTCGTCTTGGACTAAGACTATTGTTGTGTCTTCTGAAAACATTCTTTTGTTTCCCCTATGCTCTACAAAAGGTGGTGATATTGTTGGGACATATGGTGGAACTGGATTGGCAAAATGTAATGACAAGGGACAGGTGCAAGAGCATAGATCCTATTCCAATCATCCATATCCATCCCAAGTGGCTGTGTATATAGAGTCTCTACTTTCACTCCCCATGTGA
Predicted protein sequences of Glyma06g13220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g13220.1 sequence type=predicted peptide gene model=Glyma06g13220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEGNSGRGVRGTKKIAILPWELIIEILLRLPVKSLVRFKCVCKSWLCLLSDPHFATSHFEQPSTRTHRLIFIVAPSSPQIRSIDFNASLYDDSAWAALNLNFLRPNTYHNVQILGSCRGFLLLNGCQSLWAWNPSTGVYKKLSSSPIGSNLMRSVFYTFLYGFGYDSSTDDYLVVKASYSPISRYNATTRFEFLSLRANAWTDIEAAHLSYMNSSQGIGAGLFLNGAIHWLVFCCDVSLDVVVAFDLTERSFSEIPLPVDFSEEDDDFDSCELGLGVLGELLSISAVGRNHSVQVWVMKEYKVHSSWTKTIVVSSENILLFPLCSTKGGDIVGTYGGTGLAKCNDKGQVQEHRSYSNHPYPSQVAVYIESLLSLPM*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
