Glyma06g13210 - SoyBase

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Report for Sequence Feature Glyma06g13210

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10365444
stop:	10370264
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53120	AT	Annotation by Michelle Graham. TAIR10: spermidine synthase 3 \| chr5:21535429-21537653 FORWARD LENGTH=359	SoyBase	E_val: 0	ISS
GO:0006596	GO-bp	Annotation by Michelle Graham. GO Biological Process: polyamine biosynthetic process	SoyBase	N/A	ISS
GO:0042742	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to bacterium	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004766	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermidine synthase activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0016768	GO-mf	Annotation by Michelle Graham. GO Molecular Function: spermine synthase activity	SoyBase	N/A	ISS
KOG1562	KOG	Spermidine synthase	JGI		ISS
PTHR11558	Panther	SPERMIDINE SYNTHASE	JGI		ISS
PTHR11558:SF11	Panther	PUTRESCINE N-METHYLTRANSFERASE	JGI		ISS
PF01564	PFAM	Spermine/spermidine synthase	JGI		ISS
UniRef100_A2VC29	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Spermine synthase n=1 Tax=Lotus japonicus RepID=A2VC29_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_I1KAP8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAP8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g13210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g13210 not represented in the dataset	Glyma06g13210 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13210

Paralog	Evidence	Comments
Glyma04g41600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g126700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g13210

Limit To All Plant Sequences

>Glyma06g13210.4   sequence type=transcript   gene model=Glyma06g13210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTTGTAGAAAAAAGAAAAAGAGATGCAAACGTGGAAGGCTCGAATCGAAAAGTGCCCTTTCAAAAATGTCCTATAAATAGAGTAAAGAAGCGACTCCATTTTCTTCCATAGCAAGCTCTGAAAAGAAGAGAGAGAGAGAGAGAAGTGCATAGCGTGATAGAGTTTTTTGTTGTCTATACATCTTCCTTCGTTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGTATACAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTAACGGGAATGGGTTAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCTAAGGCTTCAATCCCTGAGTCTGAGGCGAAGTGCCATTCTACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAATGTATGGGAATGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATGTTTTAGTTGTTGGTGGTGGAGATGGCGGTGTACTAAGGGAAGTAGCCCGCCATAGCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTGCATCTGCATGTTGGTGATGCTGTTGATTTTCTTAAATCCGCTCCTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCAGTGGGTCCTGCCCAGGAACTTGTTGAGAAGCCTTTCTTTGATACAATAGCTAGGGCATTAAGGCCCGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACATCTTATTCAAGATATGATCTCTATTTGTCGAGAAACATTCAAAGGTTCTGTACGTTATGCATGGGCAAGTGTACCAACGTATCCAAGTGGCATGATAGGCTTTATTCTCTGTGCAACGGAAGGGCCGCCTGTTGATTTTGTAAACCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCAATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCCTGAAGAGAGAAGTGAGCCTGCTGCGTGATCTCTCCCTTCAGTAGCATAGCAATGCATGATTGCTATTGTAACCTCTAAATAAGCTATATTGACTACATTGTCATTGACAAGTGTGGGAGAAATAGGAATCTTGTGTGATTAATTTTAGGTTTTCCCATTCTGTGTGTGGAGTCTGATTAGCTATGTTAATCTTAGTCGATTTCGGATGGCTTTCTCTTGTAAGACGCGTATTGCCAATTATTAAATAATACATGGAAATAAATTGCGATGCGAAAGTAGGTTTTTAGAAATTTGATTTCATAATGAAACTTGCTGTGTATGTTAATTCTATGAGTTGATCG

>Glyma06g13210.5   sequence type=transcript   gene model=Glyma06g13210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTTTTTGTAGAAAAAAGAAAAAGAGATGCAAACGTGGAAGGCTCGAATCGAAAAGTGCCCTTTCAAAAATGTCCTATAAATAGAGTAAAGAAGCGACTCCATTTTCTTCCATAGCAAGCTCTGAAAAGAAGAGAGAGAGAGAGAGAAGTGCATAGCGTGATAGAGTTTTTTGTTGTCTATACATCTTCCTTCGTTGTTTGGGTTCGTTCGCCTTCACTCTCCGACATTCATATCATTCATCAGAGACTGGAGCCTGAGAAGAAAAGGAGAATTTATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTAACGGGAATGGGTTAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCTAAGGCTTCAATCCCTGAGTCTGAGGCGAAGTGCCATTCTACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAATGTATGGGAATGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATGTTTTAGTTGTTGGTGGTGGAGATGGCGGTGTACTAAGGGAAGTAGCCCGCCATAGCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTGCATCTGCATGTTGGTGATGCTGTTGATTTTCTTAAATCCGCTCCTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCAGTGGGTCCTGCCCAGGAACTTGTTGAGAAGCCTTTCTTTGATACAATAGCTAGGGCATTAAGGCCCGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACATCTTATTCAAGATATGATCTCTATTTGTCGAGAAACATTCAAAGGTTCTGTACGTTATGCATGGGCAAGTGTACCAACGTATCCAAGTGGCATGATAGGCTTTATTCTCTGTGCAACGGAAGGGCCGCCTGTTGATTTTGTAAACCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCAATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCCTGAAGAGAGAAGTGAGCCTGCTGCGTGATCTCTCCCTTCAGTAGCATAGCAATGCATGATTGCTATTGTAACCTCTAAATAAGCTATATTGACTACATTGTCATTGACAAGTGTGGGAGAAATAGGAATCTTGTGTGATTAATTTTAGGTTTTCCCATTCTGTGTGTGGAGTCTGATTAGCTATGTTAATCTTAGTCGATTTCGGATGGCTTTCTCTTGTAAGACGCGTATTGCCAATTATTAAATAATACATGGAAATAAATTGCGATGCGAAAGTAGGTTTTTAGAAATTTGATTTCATAATGAAACTTGCTGTGTATGTTAATTCTATGAGTTGATCG

Coding sequences of Glyma06g13210

Limit To All Plant Sequences

>Glyma06g13210.1   sequence type=CDS   gene model=Glyma06g13210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTAACGGGAATGGGTTAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCTAAGGCTTCAATCCCTGAGTCTGAGGCGAAGTGCCATTCTACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAATGTATGGGAATGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATGTTTTAGTTGTTGGTGGTGGAGATGGCGGTGTACTAAGGGAAGTAGCCCGCCATAGCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTGCATCTGCATGTTGGTGATGCTGTTGATTTTCTTAAATCCGCTCCTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCAGTGGGTCCTGCCCAGGAACTTGTTGAGAAGCCTTTCTTTGATACAATAGCTAGGGCATTAAGGCCCGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACATCTTATTCAAGATATGATCTCTATTTGTCGAGAAACATTCAAAGGTTCTGTACGTTATGCATGGGCAAGTGTACCAACGTATCCAAGTGGCATGATAGGCTTTATTCTCTGTGCAACGGAAGGGCCGCCTGTTGATTTTGTAAACCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCAATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCCTGAAGAGAGAAGTGAGCCTGCTGCGTGATCTCTCCCTTCAGTAG

>Glyma06g13210.4   sequence type=CDS   gene model=Glyma06g13210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTAACGGGAATGGGTTAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCTAAGGCTTCAATCCCTGAGTCTGAGGCGAAGTGCCATTCTACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAATGTATGGGAATGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATGTTTTAGTTGTTGGTGGTGGAGATGGCGGTGTACTAAGGGAAGTAGCCCGCCATAGCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTGCATCTGCATGTTGGTGATGCTGTTGATTTTCTTAAATCCGCTCCTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCAGTGGGTCCTGCCCAGGAACTTGTTGAGAAGCCTTTCTTTGATACAATAGCTAGGGCATTAAGGCCCGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACATCTTATTCAAGATATGATCTCTATTTGTCGAGAAACATTCAAAGGTTCTGTACGTTATGCATGGGCAAGTGTACCAACGTATCCAAGTGGCATGATAGGCTTTATTCTCTGTGCAACGGAAGGGCCGCCTGTTGATTTTGTAAACCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCAATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCCTGAAGAGAGAAGTGAGCCTGCTGCGTGATCTCTCCCTTCAGTAG

>Glyma06g13210.5   sequence type=CDS   gene model=Glyma06g13210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGACGGCGCAGGAAGAGGTTTGGAATGCCCGAAGACTATGGATGGGAAGGCGAGTAACGGGAATGGGTTAGAGAAGGAAATTCCTTCTTGTTGTCTGAAGGCTAAGGCTTCAATCCCTGAGTCTGAGGCGAAGTGCCATTCTACTGTTGTTTCTGGGTGGTTCTCAGCTTCTCAAACTTGCTCTGGGAAATCTGGGAAAGCTGTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAAAAGATCTTATACAAGGAAAAGTCGGAGTACCAAGAGGTCTTGGTTTTTGAGTCATCAATGTATGGGAATGTGCTTGTACTTGATGGAATAGTTCAATTGACTGAGAGGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTTCCCCTCTGTTCAATTCATTCGCCCAAAAATGTTTTAGTTGTTGGTGGTGGAGATGGCGGTGTACTAAGGGAAGTAGCCCGCCATAGCTCTGTGGAACATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCACAGTTAGCTGTTGGGTTTGAAGATTCTCGAGTGCATCTGCATGTTGGTGATGCTGTTGATTTTCTTAAATCCGCTCCTGAAGGGAAGTATGATGCCATAATTGTTGATTCCTCAGATCCAGTGGGTCCTGCCCAGGAACTTGTTGAGAAGCCTTTCTTTGATACAATAGCTAGGGCATTAAGGCCCGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACATCTTATTCAAGATATGATCTCTATTTGTCGAGAAACATTCAAAGGTTCTGTACGTTATGCATGGGCAAGTGTACCAACGTATCCAAGTGGCATGATAGGCTTTATTCTCTGTGCAACGGAAGGGCCGCCTGTTGATTTTGTAAACCCTATCAATCCCATTGAAAAGTTGGAAGGTGCTAATGAGCACAAAAGAGAACTTCAATTCTACAATTCAGAGATGCACTCAGCTGCTTTTGCGTTGCCTGCGTTCCTGAAGAGAGAAGTGAGCCTGCTGCGTGATCTCTCCCTTCAGTAG

Predicted protein sequences of Glyma06g13210

Limit To All Plant Sequences

>Glyma06g13210.1   sequence type=predicted peptide   gene model=Glyma06g13210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDGAGRGLECPKTMDGKASNGNGLEKEIPSCCLKAKASIPESEAKCHSTVVSGWFSASQTCSGKSGKAVYFNNPMWPGEAHSIKVEKILYKEKSEYQEVLVFESSMYGNVLVLDGIVQLTERDECAYQEMIAHLPLCSIHSPKNVLVVGGGDGGVLREVARHSSVEHIDICEIDKMVIDVSRKFFPQLAVGFEDSRVHLHVGDAVDFLKSAPEGKYDAIIVDSSDPVGPAQELVEKPFFDTIARALRPGGVLCNMAESMWLHTHLIQDMISICRETFKGSVRYAWASVPTYPSGMIGFILCATEGPPVDFVNPINPIEKLEGANEHKRELQFYNSEMHSAAFALPAFLKREVSLLRDLSLQ*

>Glyma06g13210.4   sequence type=predicted peptide   gene model=Glyma06g13210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDGAGRGLECPKTMDGKASNGNGLEKEIPSCCLKAKASIPESEAKCHSTVVSGWFSASQTCSGKSGKAVYFNNPMWPGEAHSIKVEKILYKEKSEYQEVLVFESSMYGNVLVLDGIVQLTERDECAYQEMIAHLPLCSIHSPKNVLVVGGGDGGVLREVARHSSVEHIDICEIDKMVIDVSRKFFPQLAVGFEDSRVHLHVGDAVDFLKSAPEGKYDAIIVDSSDPVGPAQELVEKPFFDTIARALRPGGVLCNMAESMWLHTHLIQDMISICRETFKGSVRYAWASVPTYPSGMIGFILCATEGPPVDFVNPINPIEKLEGANEHKRELQFYNSEMHSAAFALPAFLKREVSLLRDLSLQ*

>Glyma06g13210.5   sequence type=predicted peptide   gene model=Glyma06g13210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDGAGRGLECPKTMDGKASNGNGLEKEIPSCCLKAKASIPESEAKCHSTVVSGWFSASQTCSGKSGKAVYFNNPMWPGEAHSIKVEKILYKEKSEYQEVLVFESSMYGNVLVLDGIVQLTERDECAYQEMIAHLPLCSIHSPKNVLVVGGGDGGVLREVARHSSVEHIDICEIDKMVIDVSRKFFPQLAVGFEDSRVHLHVGDAVDFLKSAPEGKYDAIIVDSSDPVGPAQELVEKPFFDTIARALRPGGVLCNMAESMWLHTHLIQDMISICRETFKGSVRYAWASVPTYPSGMIGFILCATEGPPVDFVNPINPIEKLEGANEHKRELQFYNSEMHSAAFALPAFLKREVSLLRDLSLQ*

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