Glyma06g13200 - SoyBase

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Report for Sequence Feature Glyma06g13200

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10356940
stop:	10365088
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G53130	AT	Annotation by Michelle Graham. TAIR10: cyclic nucleotide gated channel 1 \| chr5:21537830-21540490 REVERSE LENGTH=716	SoyBase	E_val: 0	ISS
GO:0006811	GO-bp	Annotation by Michelle Graham. GO Biological Process: ion transport	SoyBase	N/A	ISS
GO:0006813	GO-bp	Annotation by Michelle Graham. GO Biological Process: potassium ion transport	SoyBase	N/A	ISS
GO:0006816	GO-bp	Annotation by Michelle Graham. GO Biological Process: calcium ion transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
GO:0005221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: intracellular cyclic nucleotide activated cation channel activity	SoyBase	N/A	ISS
GO:0005242	GO-mf	Annotation by Michelle Graham. GO Molecular Function: inward rectifier potassium channel activity	SoyBase	N/A	ISS
GO:0005261	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cation channel activity	SoyBase	N/A	ISS
GO:0005516	GO-mf	Annotation by Michelle Graham. GO Molecular Function: calmodulin binding	SoyBase	N/A	ISS
GO:0030551	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cyclic nucleotide binding	SoyBase	N/A	ISS
KOG0498	KOG	K+-channel ERG and related proteins, contain PAS/PAC sensor domain	JGI		ISS
PTHR10217	Panther	VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL	JGI		ISS
PTHR10217:SF7	Panther	POTASSIUM CHANNEL PROTEIN EAG-RELATED	JGI		ISS
PF00027	PFAM	Cyclic nucleotide-binding domain	JGI		ISS
PF00520	PFAM	Ion transport protein	JGI		ISS
UniRef100_B9RIK4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Cyclic nucleotide-gated ion channel, putative n=1 Tax=Ricinus communis RepID=B9RIK4_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1KAP5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAP5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g13200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13200

Paralog	Evidence	Comments
Glyma04g41610	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13200 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g126600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13200

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g13200

Limit To All Plant Sequences

>Glyma06g13200.1   sequence type=CDS   gene model=Glyma06g13200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTTTCAGCAAGACAAATTTGTTAGATTTCGGGATTGGAGTTCAGACAGGGGCTCCGAGACCAACTCTCCTGCAATTCACGTGACACGCTCGGGAAGAGTTAAGAATACACTAAATTCAGTTTCCGAGAAGTTTCAAAGGGGTTTGGAATCTAGTTCGGAGGGGATAAAGAGATTTAGAAAATCATTCAAGTCTCTTCCCTATAACAGAGTTCTTTCTAGAAATTTTAGTTCTAAAAAGAAAATCCTTGATCCGCAGGGACCTTTCCTTCAAAAGTGGAACAAGATATTTGTATTATCATGTCTTATTGCTGTATCACTTGATCCTTTGTTCTTCTATGTCCCTGTGATTGATGATAACAAGAAATGTCTTTCAATGGACAGAAAAATGGAAATTACAGCAACTGTTTTAAGATCTTTCTCTGATATTTTTTATATAATCCATATAATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAAGATGCTTGGGCAATAGCAATGCGGTATCTATCATCATACTTCTTGATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGTGGCAATTCTAATTATCATTCCAAAGTTGAGTGGCTCTGAATCACTGAATACAAAGACCTTGCTGAAATTTATTGTCTGCTTCCAATATATCCCACGGTTTTTACGAATAATTCCATTATATAAAGAAGTTACTAGAACCTCTGGCATTCTCACTGAAACAGCTTGGGCTGGAGCAGCATTCAATCTCTTTCTTTACATGCTAGCAAGTCATGTTATTGGTGCCTTTTGGTACTTGTTTTCTATAGAAAGAGAAACCACATGCTGGCAAGATGCGTGTCGACGAAATAGCACATGTAACACAACAGCTATGTATTGTGATAATCATCAAGTTTTGGGCACAATGTCAGCATTCCTGAATGCTTCTTGCCCAATACAGGATCAAAATACAACCCTCTTTAATTTTGGAATATTTCTTGATGCCCTTCAATCTGGAGTTGTGGAGTCAAGAGATTTCCCACAAAAGTTCTTTTATTGCTTTTGGTGGGGCCTAAGAAACTTGAGTTCTCTTGGTCAGAACCTTGCAACAAGTACCTATGTTTGGGAAATCAGCTTTGCTATTTTCATTTCAATTGCTGGTCTGGTGTTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACCACCAGATTGGAGGAAATGAGGGTGAAAAGGAGAGATGCAGAACAGTGGATGTCCCATCGATTACTTCCTGACAGCCTGAGAGAAAGAATCAGACGACATGAGCAGTACAAATGGCAAGAAACCAGAGGTGTTGATGAAGACAGTTTGATTCGAGATCTTCCCAAGGATTTAAGAAGGGATATTAAGCGGCATCTTTGCTTGGCTTTGCTGATGAGGGTGCCAATGTTTGAGAACATGGACGAGCAACTTTTGGATGCTATGTGTGACCGACTCAAGCCAGTGCTGTACACAGAAGAAAGCTGCATTGCCCGGGAAGGAGATCCTGTTGATGAGATGCTCTTCATCATGCGCGGAAAGCTATTGACGGTGACCACTAATGGTGGAAGAACAGGCTTCTTTAACTCTGAATACCTCAAGGCTGGCGACTTTTGTGGAGAGGAACTTCTCACATGGGCACTAGATCCTCAATCCTCATCGAACCTTCCCATATCAACTAGGACTGTCCAAACTCTTTCAGAAGTGGAAGCATTCGCTCTAAAAGCCGATGACTTGAAGTTCGTCGCATCTCAATTTCGGCGCCTTCATAGCAAGCAGCTTCGGCACACTTTCAGGTTTTATTCGCAACAATGGCGTACATGGGCTGCATGTTTCATACAAGCAGCGTGGAGGCGCTATAGTAAAAAGAAGCTGGAAGAGTCTCTCAGGGAAGAGGAGAATAGGCTGCAAGATGCATTGGCCAAAGCAGGTGGTAGTTCACCAAGTCTAGGAGCCACAATATATGCTTCAAGGTTTGCAGCTAATGCACTTAGACTTTTACGTAGAAATGGCACAAGAAAGACGAGGGTGCCTGAGAGAATATCACCCATGTTGCTGCAGAAGCCTGCTGAGCCTGATTTTACTTCTGAAGAACAATAG

Predicted protein sequences of Glyma06g13200

Limit To All Plant Sequences

>Glyma06g13200.1   sequence type=predicted peptide   gene model=Glyma06g13200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNFQQDKFVRFRDWSSDRGSETNSPAIHVTRSGRVKNTLNSVSEKFQRGLESSSEGIKRFRKSFKSLPYNRVLSRNFSSKKKILDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVIDDNKKCLSMDRKMEITATVLRSFSDIFYIIHIIFQFRTGFIAPSSRVFGRGVLVEDAWAIAMRYLSSYFLIDILAVLPLPQVAILIIIPKLSGSESLNTKTLLKFIVCFQYIPRFLRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVIGAFWYLFSIERETTCWQDACRRNSTCNTTAMYCDNHQVLGTMSAFLNASCPIQDQNTTLFNFGIFLDALQSGVVESRDFPQKFFYCFWWGLRNLSSLGQNLATSTYVWEISFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDSLIRDLPKDLRRDIKRHLCLALLMRVPMFENMDEQLLDAMCDRLKPVLYTEESCIAREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPQSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKKKLEESLREEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRNGTRKTRVPERISPMLLQKPAEPDFTSEEQ*

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