SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G53170 | AT | Annotation by Michelle Graham. TAIR10: FTSH protease 11 | chr5:21563023-21567922 REVERSE LENGTH=806 | SoyBase | E_val: 0 | ISS |
| GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
| GO:0009408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to heat | SoyBase | N/A | ISS |
| GO:0010304 | GO-bp | Annotation by Michelle Graham. GO Biological Process: PSII associated light-harvesting complex II catabolic process | SoyBase | N/A | ISS |
| GO:0019761 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process | SoyBase | N/A | ISS |
| GO:0030163 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein catabolic process | SoyBase | N/A | ISS |
| GO:0032880 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of protein localization | SoyBase | N/A | ISS |
| GO:0005739 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| GO:0009941 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0004176 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP-dependent peptidase activity | SoyBase | N/A | ISS |
| GO:0004222 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metalloendopeptidase activity | SoyBase | N/A | ISS |
| GO:0005524 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATP binding | SoyBase | N/A | ISS |
| GO:0008237 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: metallopeptidase activity | SoyBase | N/A | ISS |
| GO:0016887 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ATPase activity | SoyBase | N/A | ISS |
| GO:0017111 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity | SoyBase | N/A | ISS |
| KOG0734 | KOG | AAA+-type ATPase containing the peptidase M41 domain | JGI | ISS | |
| PTHR23076 | Panther | METALLOPROTEASE M41 FTSH | JGI | ISS | |
| PTHR23076:SF10 | Panther | CELL DIVISION PROTEIN FTSH HOMOLOG | JGI | ISS | |
| PF00004 | PFAM | ATPase family associated with various cellular activities (AAA) | JGI | ISS | |
| PF00076 | PFAM | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | JGI | ISS | |
| PF01434 | PFAM | Peptidase family M41 | JGI | ISS | |
| UniRef100_I1KAN8 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAN8_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q6A167 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Ftsh-like protease n=1 Tax=Pisum sativum RepID=Q6A167_PEA | SoyBase | E_val: 0 | ISS |
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Glyma06g13135 not represented in the dataset |
Glyma06g13135 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g41660 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g126000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g13135.1 sequence type=CDS gene model=Glyma06g13135 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCATCGGTATCCAGTCAACCACAGTTCCGTTACACTCAGCCACCGTCAAAGGTTCTCCATTTGAGGAACTTGCCATGGGAGTGCACAGAGGAGGAACTGATTGAGCTTGGGAAGCCGTTTGGCAAAGTTGTTAACACAAAATGCAATGTTGGGGCGAATAGAAATCAAGCTTTTATTGAATTTGCAGATTTGAATCAAGCCATTGCAATGATATCGTACTATGCCTCATCATCAGAGCCTGCTCAAGTACGTGGGAAAACTGTATACCTACAATATTCAAATAGGCAAGAAATAGTGAATAACAAAACTACTGCAGATGTTCCCGGGAATGTATTGTTGGTAACGATTGAGGGTGCAGATGCACGTCTTGTCAGCATTGATGTCTTGCACTTGGTTTTTTCAGCCTTTGGATTTGTGCATAAGATTACTACTTTCGAGAAGACAGCAGGATTTCAGGCACTGGTGCAATTCTCAGATGCAGAGACTGCCACCTCTGCGAAGGATGCTTTGGATGGAAGAAGCATACCTAGGTATCTGCTGCCTGAGCATGTGGGACCATGTACCCTTAGGATCACTTATTCCGGACATTCAGATTTAAGTGTAAAGTTTCAAAGCCACAGGAGCAGAGACTATACTAATCCTTACCTTCCTGTTGCTCCATCAGCTGTCGAGGGAAGTGGACAGGCTATGGTTGGTTTGGATGGGAAAAGATTGGAGACTGAGAGTAATGTTCTCCTTGCATCTATTGAGAACATGCAATATGCTGTAACATTGGATGTCTTACACATGGTTTTCTCTGCTTTTGGCCCTGTCCAAAAAATTGCAATGTTCGATAAGAATGGTGGTTTGCAGGCTCTGATTCAGTATCCAGATACTCAGACAGCTGTTGTGGCCAAGGAAGCCTTGGAAGGACATTGCATATATGATGGGGGTTTTTGCAAGCTTCACCTTTCATATTCACGACATACTGATCTAAGTATAAAGGTCAATAATGATAGGAGCAGAGACTATACCATTCCTAATACCCCTATTGTGAACGCCCAACCCTCAATTTTCGGGCAACAATCTGTTTCCATGATGGGCCCTTCACAACAACCATTCTATGGGTCTCAGGCTGGATGGGGGACAGCTCCACCAGCAGCGATAGATAAGGTGATACTCTTAGTAGCTCTTCCTTCACACATTCATTCCTCCTCTGCTCCGAGCGAAGAAGAAGAAACAATAACCATTATGGCCACACTTCAAGCCTCACTTCTCTGCAGAACTTCTCTCCCATTTAGCTCTCACCATCCTCAACTCTACAAACTCCATCCTCACTCTTTCAACTTCCTATCTCCATGCAAAATGTTTCAGCCGCGCCTTCACTCTTCCGTCTCTCGCAGCGTCGCTTCCCGCTCCCAATCCAATCCCTCCGGCGCCGATTCTAGTGTAATTGAAAACGAAGCGACTCCGAGTGTCGTCGACGCTGAGAGTTCCGATCCTTCGATCGGAGAGGAAAAGAGCGAGAGTGCAAAAGAGGAAGAGAGGTTGCCGATTGTGGCGTTGTACGAGGGAGCGAGAGAGAGTGTTGAAAAGGCTTTCGCCGATTTCATGACCTGGTTGCCTCTCTGGCAGCAGGAGAGGCGTTTGGCTAGGTTAATTGTTGACGCCGAGGCGAATCCCAATGATGTCGCCAAACAAACCACACTACTTATTGAACTTAATAAACACAGTCCTGAGTCTGTCATCAAGCACTTTGAAGGAAGGGAGGGTGCTGTAGACAGTATAGGAGTTGTAGAATATCTTCGAGCTCTTGTGGTCACTAATGCTATTGCTGAATATCTGCCAAATGAGGAATATGGGAAACCTTCTAGACTTCCTACCCTGTTGCAAGAGTTGAAGCAGCGAGCATCAGGTAAATCAGATGAGCCTATTCTTAGCCCTGGAACATCTGAGAGGCAGCCATTACATGTTGCTATGGTTGATCGCAAAGTATCACAGAAGTCACGTTTTGTACAAGATCTTTTGTCAACTATATTGTTTATTGTTGTTATGGGATTGGTCTGGGTTGTGGGTATGGTTGCACTTCAAAAATTCATAGTAAGCTTGGGTGGGATTGGAACTTCAAGTGTTGGCTCAAGTAGTACATATGCTCCAAAGGAACTAAATAAAGAAGTGGTGCCAGAAAAGAATGTTAAAACATTTAAAGATGTGAAAGGTTGTGACGATGCAAAACAAGAACTTGAGGAAGTTGTGGAATACCTGAAAAATCCAGCTAAATTTACCCGCCTTGGAGGAAAGTTGCCGAAGGGGATTCTCTTGACTGGACCACCTGGAACTGGAAAAACTCTTCTAGCCAAGGCTATTGCTGGAGAAGCTGGTGTTCCATTTTTCTATCGGGCAGGATCAGAATTTGAGGAGATGTATGTTGGAGTTGGTGCTCGACGTGTAAGATCCTTATTTCAAGCAGCAAAAAAGAAGGCTCCTTGTATTATTTTCATTGATGAAATAGATGCTGTTGGTTCAACTAGGAAACAATGGGAAGGTCATACAAAGAAGACATTGCACCAACTACTTGTTGAAATGGATGGATTTGAGCAGAATGAAGGAATAATAGTAATTGCTGCAACAAACCTGCCTGATATTCTTGATCCCGCTTTAACAAGGCCTGGTAGATTTGATAGACATATTGTTGTACCAAATCCAGATTTACGTGGTCGACAAGAAATATTGGAGCTTTACCTTCAAGATAAACCATTGGCTGATGATATAGATATTAAATCAATTGCTCGTGGAACCCCAGGATTCAATGGGGCAGATCTTGCAAACCTGGTAAACATTGCTGCCATTAAAGCTGCTGTCGAAGGTGCAGAGAATTTAGCAGCTGCACAGTTAGAGTTTGCCAAAGATAGAATAATTATGGGTACAGAACGGAAAACAATGTCCATATCCGAAGAGTCAAAAAAGCTTACTGCTTATCATGAGAGTGGCCATGCAATTGTTGCTATTAACACTGAGGGTGCTCAACCAATTCACAAGGCAACAATCATGCCTCGTGGATCTGCTTTAGGAATGGTCACTCAGCTTCCCTCTGGTGATGAGACATCAATCAGCAAGAAGCAGTTACTAGCTCGTCTTGATGTTTGTATGGGAGGAAGAGTGGCAGAAGAAATTATCTTTGGTCAGGATCATATCACAACAGGAGCAAGTAGTGATCTCCATACAGCTACTGAGCTTGCCCAGTATATGGTATCAATTTGTGGGATGAGTGATGCGATAGGGCCAATTCATATAAAGGAGAGTCCTAGTTCTGACTTGCAGTCCCGTATTGATGCAGAGGTTGTGAAACTTCTTAGAGAAGCATATGATCGAGTAAAAGCCCTTCTAAGGAAGCATGAGAAGGCATTACATGCTCTAGCAAATGCATTATTGGAGTATGAGACGCTTAATGCAGAAGAAATCAGGCGGATACTACGACCATATCGGGAAGGAAGACTGCCAAAGGACCAGGAACAAGAAGCAGCAGAAGAGGAGCTCGTGTTGGTCTAA
>Glyma06g13135.1 sequence type=predicted peptide gene model=Glyma06g13135 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELIELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTADVPGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRSIPRYLLPEHVGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAPSAVEGSGQAMVGLDGKRLETESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDTQTAVVAKEALEGHCIYDGGFCKLHLSYSRHTDLSIKVNNDRSRDYTIPNTPIVNAQPSIFGQQSVSMMGPSQQPFYGSQAGWGTAPPAAIDKVILLVALPSHIHSSSAPSEEEETITIMATLQASLLCRTSLPFSSHHPQLYKLHPHSFNFLSPCKMFQPRLHSSVSRSVASRSQSNPSGADSSVIENEATPSVVDAESSDPSIGEEKSESAKEEERLPIVALYEGARESVEKAFADFMTWLPLWQQERRLARLIVDAEANPNDVAKQTTLLIELNKHSPESVIKHFEGREGAVDSIGVVEYLRALVVTNAIAEYLPNEEYGKPSRLPTLLQELKQRASGKSDEPILSPGTSERQPLHVAMVDRKVSQKSRFVQDLLSTILFIVVMGLVWVVGMVALQKFIVSLGGIGTSSVGSSSTYAPKELNKEVVPEKNVKTFKDVKGCDDAKQELEEVVEYLKNPAKFTRLGGKLPKGILLTGPPGTGKTLLAKAIAGEAGVPFFYRAGSEFEEMYVGVGARRVRSLFQAAKKKAPCIIFIDEIDAVGSTRKQWEGHTKKTLHQLLVEMDGFEQNEGIIVIAATNLPDILDPALTRPGRFDRHIVVPNPDLRGRQEILELYLQDKPLADDIDIKSIARGTPGFNGADLANLVNIAAIKAAVEGAENLAAAQLEFAKDRIIMGTERKTMSISEESKKLTAYHESGHAIVAINTEGAQPIHKATIMPRGSALGMVTQLPSGDETSISKKQLLARLDVCMGGRVAEEIIFGQDHITTGASSDLHTATELAQYMVSICGMSDAIGPIHIKESPSSDLQSRIDAEVVKLLREAYDRVKALLRKHEKALHALANALLEYETLNAEEIRRILRPYREGRLPKDQEQEAAEEELVLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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