Glyma06g13060 - SoyBase

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Report for Sequence Feature Glyma06g13060

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10197103
stop:	10199492
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G46330	AT	Annotation by Michelle Graham. TAIR10: arabinogalactan protein 16 \| chr2:19018730-19019108 REVERSE LENGTH=73	SoyBase	E_val: 2.00E-17	ISS
GO:0006569	GO-bp	Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process	SoyBase	N/A	ISS
GO:0009684	GO-bp	Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0031225	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: anchored to membrane	SoyBase	N/A	ISS
PF06376	PFAM	Protein of unknown function (DUF1070)	JGI		ISS
UniRef100_G7J699	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Arabinogalactan peptide n=1 Tax=Medicago truncatula RepID=G7J699_MEDTR	SoyBase	E_val: 9.00E-24	ISS
UniRef100_I1KAM7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAM7_SOYBN	SoyBase	E_val: 5.00E-33	ISS

Expression Patterns of Glyma06g13060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13060

Paralog	Evidence	Comments
Glyma04g41720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g125300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g13060

Limit To All Plant Sequences

>Glyma06g13060.2   sequence type=transcript   gene model=Glyma06g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCTTGATTCTCACCACCCTAACAACTTTCTTACACGCAAGTTTTGCTGCTTTGGCTTCTCTCTCCTTTCTTTCTTTCTTTCTCTCCTAAAGTTTGAGAGAATCAAGAGAAGGAGAGGGGAGAGACAGAGAGAAAACAATAAGTCAAAAACAAGAACAAGAAAGACATATAATTTTAAAGAGAAACATGGCCGTTTCCAGTGCTTCATTGAGGGTGGTTGCCTTCCTTAGCCTCATTCTTGCAGCTCTTATGACAGTGGCTTCTTCACAAGTCACTGCTCCGGCTCCCGCACCAACAAGCGATGGCACCACAATCGACCAAGCGGTTGCATATGTTCTAATGCTTGTGGCTTTGGTGCTGACCTACATCATGCATTGAACCATCATGGGACTCCTCGTTTATTTCTAGATTGATGGATGGTAACAGAGCCTTCTCAAGGCAAAGAGAGGCATTCGTGTCATTAGGACTACGGAAGAGATTTTAATTAATTGGACAAATGCATTCTTGGGCAAGGCGTTTCACATCCTCTATCCCTTCTCAACATCTACAAAGTAAGAAAAATCCAAACCCAATCTCAATTGAAACAAGTTTATACAAGGTCATAAAACCACAAGTTCGAATTTAATAGTCATGCCTAAATGAAAGCTTGTTTGGTGGCCAAGATATGATTAAAGTAAGATGAATAAGATTGTTAACTCTTATAGTATTCAATATTTGATGCGCACTAATTAAGTTTGGATTCACTTGTACTCAGCTCGTAAATGTGGGAAGTCTGAAAAAGATTAAGGAGAACAACAAAATTTCATCAATTTTTTTTTAAAAATAGTATCTTAGTTTTCTCGCATATATATTTTGCCGTAAATATCTATTTAGGCATTATATATTCATCCCATGAAGTTTACAAAATAACAATCTGGTAAACATTTTTCAGTGTAATATGCAACTTTAATATTGTT

Coding sequences of Glyma06g13060

Limit To All Plant Sequences

>Glyma06g13060.1   sequence type=CDS   gene model=Glyma06g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTTTCCAGTGCTTCATTGAGGGTGGTTGCCTTCCTTAGCCTCATTCTTGCAGCTCTTATGACAGTGGCTTCTTCACAAGTCACTGCTCCGGCTCCCGCACCAACAAGCGATGGCACCACAATCGACCAAGCGGTTGCATATGTTCTAATGCTTGTGGCTTTGGTGCTGACCTACATCATGCATTGA

>Glyma06g13060.2   sequence type=CDS   gene model=Glyma06g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGTTTCCAGTGCTTCATTGAGGGTGGTTGCCTTCCTTAGCCTCATTCTTGCAGCTCTTATGACAGTGGCTTCTTCACAAGTCACTGCTCCGGCTCCCGCACCAACAAGCGATGGCACCACAATCGACCAAGCGGTTGCATATGTTCTAATGCTTGTGGCTTTGGTGCTGACCTACATCATGCATTGA

Predicted protein sequences of Glyma06g13060

Limit To All Plant Sequences

>Glyma06g13060.1   sequence type=predicted peptide   gene model=Glyma06g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSSASLRVVAFLSLILAALMTVASSQVTAPAPAPTSDGTTIDQAVAYVLMLVALVLTYIMH*

>Glyma06g13060.2   sequence type=predicted peptide   gene model=Glyma06g13060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVSSASLRVVAFLSLILAALMTVASSQVTAPAPAPTSDGTTIDQAVAYVLMLVALVLTYIMH*

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