Glyma06g13040 - SoyBase

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Report for Sequence Feature Glyma06g13040

Feature Type:	gene_model
Chromosome:	Gm06
Start:	10171106
stop:	10173521
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g13040

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G27950	AT	Annotation by Michelle Graham. TAIR10: cytokinin response factor 4 \| chr4:13909732-13910739 REVERSE LENGTH=335	SoyBase	E_val: 1.00E-53	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0042991	GO-bp	Annotation by Michelle Graham. GO Biological Process: transcription factor import into nucleus	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_G7J693	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ethylene responsive transcription factor 1a n=1 Tax=Medicago truncatula RepID=G7J693_MEDTR	SoyBase	E_val: 1.00E-124	ISS
UniRef100_UPI0002339488	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339488 related cluster n=1 Tax=unknown RepID=UPI0002339488	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g13040

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g13040

Paralog	Evidence	Comments
Glyma04g41740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g13040 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g125100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g13040

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g13040

Limit To All Plant Sequences

>Glyma06g13040.2   sequence type=CDS   gene model=Glyma06g13040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGACAGTATCCTATGCAAACACACAGTGCATCACACCGTTACCAAGAAACTCATCTCCCCCAAAAAATCATCCCAAACCAATTCGACGACAGAGCGCAGAATAGTGCGGATTTCATACACTGATCCAGACGCAACCGACTCCTCCAGCGACGAGGAAGGTTTCCCCTTCGTTCGCCAAAGAATGAAGCGCTATGTTAACCAGATTGAAATAGAAACCGCCGCCGCCGAAAAAGTTGTTCGGAAAAGGCCCGCCGGTGAGGCTTGCCGCCGGCCGGCGAAGCTTCACTCCGGGAAGAAGTTCCGCGGCGTCCGGCAGCGACCGTGGGGGAAATGGGCGGCGGAGATTCGGGATCCGGCGAGAAGAGTGCGTCTCTGGTTGGGAACCTACGACACCGCCGAAGAAGCTGCTATGGTTTACGACAATGCCGCTATTCGTCTTCGTGGCCCTGACGCGTTAACAAACTTCGTAACGCCGCCGAAAAGAGATTCTCCGTCTCCGTCTCCACCGCCGGCGGCGGCGGAGACTCCGGCGGAGGTTTGCGAGATGAAGGTTGTGGTCACCGAAGAAGCCTCCGGCTCCGGCTACGACTCCAGCGAGGATCATTGCCACCACAACCTCTCCTCTCCGACTTCGGTTCTCCAGTTCCGAAGCAACTCGAGCGAAGAAAATTCCGAGTCTCAGCAGAAAGCAGAACAAGTGTTGAGAGAATGCGAGGGTGAGACAGAAACGAGTTTGTTCGAGGAAACGGGTGAGTTTTTGGCGCTGGATAACATGCCTTTGCCTGCCTGGGATGACGTGTTCAATTTCGAAACGCCAGAGTACCCTCCTCTTCTGTTTCAAGAGGAGGAGAATCTGAATCTACTTCATCAGTCCCAGATGTTGGGCGAAACGGTGCAGTTTTCCTCGGAGGAAGGGTTCAGTGATGAAAGCAGTATCATGCTGGCCGACTCGCTCATAGATTTCGACAGAGCCTGCCCTTCACCATCCTCCTTGTGCCAAGTGGACGATTTCTTCCAAGACATTTTGTTTGCTTCTGATCCTCTCGTTCTGCTCTGA

Predicted protein sequences of Glyma06g13040

Limit To All Plant Sequences

>Glyma06g13040.2   sequence type=predicted peptide   gene model=Glyma06g13040   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEDSILCKHTVHHTVTKKLISPKKSSQTNSTTERRIVRISYTDPDATDSSSDEEGFPFVRQRMKRYVNQIEIETAAAEKVVRKRPAGEACRRPAKLHSGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTYDTAEEAAMVYDNAAIRLRGPDALTNFVTPPKRDSPSPSPPPAAAETPAEVCEMKVVVTEEASGSGYDSSEDHCHHNLSSPTSVLQFRSNSSEENSESQQKAEQVLRECEGETETSLFEETGEFLALDNMPLPAWDDVFNFETPEYPPLLFQEEENLNLLHQSQMLGETVQFSSEEGFSDESSIMLADSLIDFDRACPSPSSLCQVDDFFQDILFASDPLVLL*

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