Report for Sequence Feature Glyma06g12960
Feature Type: gene_model
Chromosome: Gm06
Start: 10108901
stop: 10109650
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g12960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G18690 AT
Annotation by Michelle Graham. TAIR10: MAP kinase substrate 1 | chr3:6429755-6430423 REVERSE LENGTH=222
SoyBase E_val: 6.00E-24 ISS
GO:0009870 GO-bp
Annotation by Michelle Graham. GO Biological Process: defense response signaling pathway, resistance gene-dependent
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
PF05678 PFAM
VQ motif
JGI ISS
UniRef100_G7J659 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein MKS1 n=1 Tax=Medicago truncatula RepID=G7J659_MEDTR
SoyBase E_val: 2.00E-74 ISS
UniRef100_UPI0002339487 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339487 related cluster n=1 Tax=unknown RepID=UPI0002339487
SoyBase E_val: 3.00E-175 ISS
Proteins Associated with Glyma06g12960
Locus Gene Symbol Protein Name
VQ24 VQ motif containing protein gene 24
Expression Patterns of Glyma06g12960
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g12960
Paralog Evidence Comments
Glyma04g41820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g12960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g124400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g12960
Coding sequences of Glyma06g12960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g12960.2 sequence type=CDS gene model=Glyma06g12960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGATCATCAATTCTCACACATCATCCCCACAGAAAGATCACCTAGAAGAGAACTCCAACTTCAAGGTCCACGCCCTACACCTCTCAGAATAAACAAAGACTCTCATAAAATCAAGAAACCACCGTTGGCACCACAACCTTCACACCCTCATCAACCTCCACCGCGCCAACCTATAATAATCTACACCGTGTCCCCCAAGGTGATTCACACCACCCCAAGTGACTTCATGAACCTCGTCCAACGCCTCACTGGGTCCAGTTCTTCTTCCTCTGCTGAAGTGGTCATGTCCAACAATAACAACACCACTCATGTCGACCCTTTCAACAACGGCGGCGGCGGAATGGTGTCGCCGGCGGCGCGTTACGCCACCATAGAGAAGGCCATGTCCCCTATGGGGAAAAAACATGTTCTTCTTCCAAGTGTGAACAATATTATAAGCGATGTGGAAGGGATAGAGATTAGTATAGGTGATGGTGTACTTGAGAGATCACAACAAAATATGTTTCAAGGGATTCTGTCCCCGGGTCCAGCTTCGCTATCTCCCATTCCTTCGAATTTTTTCTCTCCACCGTCTTCTTCGGATCCAAGCATGATTAGCTTCCTTCGTGATTTGAGTCCTATGTTTCAAAGCGGAAGAAATTTTACGGAGGGTGGTAGTTCTTTCGTCTTGCCTAGCCCTTCTTCAAACTTCAGTTTTGTTTCACCGCATACTCCTTCTATAGACTTATTCAACTATTTCTTAGATTAG
Predicted protein sequences of Glyma06g12960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g12960.2 sequence type=predicted peptide gene model=Glyma06g12960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MDHQFSHIIPTERSPRRELQLQGPRPTPLRINKDSHKIKKPPLAPQPSHPHQPPPRQPIIIYTVSPKVIHTTPSDFMNLVQRLTGSSSSSSAEVVMSNNNNTTHVDPFNNGGGGMVSPAARYATIEKAMSPMGKKHVLLPSVNNIISDVEGIEISIGDGVLERSQQNMFQGILSPGPASLSPIPSNFFSPPSSSDPSMISFLRDLSPMFQSGRNFTEGGSSFVLPSPSSNFSFVSPHTPSIDLFNYFLD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
