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Report for Sequence Feature Glyma06g12930

Feature Type:gene_model
Chromosome:Gm06
Start:10070682
stop:10076012
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G21350AT Annotation by Michelle Graham. TAIR10: Thioredoxin superfamily protein | chr1:7477376-7479012 REVERSE LENGTH=252 SoyBaseE_val: 5.00E-121ISS
GO:0010027GO-bp Annotation by Michelle Graham. GO Biological Process: thylakoid membrane organization SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0016209GO-mf Annotation by Michelle Graham. GO Molecular Function: antioxidant activity SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
PF00578PFAM AhpC/TSA family JGI ISS
UniRef100_I1KAL3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KAL3_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LPL8UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT1G21350 protein n=2 Tax=Arabidopsis thaliana RepID=Q9LPL8_ARATH SoyBaseE_val: 2.00E-118ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

ParalogEvidenceComments
Glyma04g41870 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g124100 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma06g12930.2   sequence type=transcript   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAAGTGTGGAAAAACGAAGACCAGAAAAGAAACAGAGTGATTGAAGAAGAAGATGATAATATTGATGATGGAGAATTGAGGTTGGAGTTGGAGTGAGTAACCCAGCACAGCAATGGCATTGAGACTGAGACTCAAAGTGTCTTCAATTGGGTCACCTTTTCTGCAGTTAGGTTCTTCTGCAAGTGCAGCATGCTCTGTTTCCAAACTTGGTTTTCATCCACCACGCTTGCAACTCAACAAAAATTCACACCCAATAAGGCTTTTTGTTCGGGCTGCTAGAATTGAGTCCAAAGGTGTTACCTTGGGTTTCAGGACCCCACAATTTCAGCTTCCGGAGCCCCTTACCGGGACGACCTGGACATTGGATGATTTTGAAGCTTATCCAGCTCTACTGGTTATGTTTATATGCAATCACTGTCCATTTGTTAAGCACCTGAAAAAAGACATTGTAAAGCTTACAAAGTTCTATATGGAGAAAGGACTTGCCGTCATTGCCATATCTTCAAATTCCGTAGCCACACACCCCCAGGATGGTCCAGAATTCATGGCAGAAGATGCTAAACTGTTTGGTTATCCTTTCCCATACCTATATGATGAGTCACAGGATGTTGCACAACATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTCAAAAAGGATGGTCGAAGGCCGTTTGAGCTGGTTTATCATGGTCAATTTGATGATTCACGCCCAAGTAATAATGTACCGGTCACTGGAAGACTTGAGCTTGGCAATAGATCGTGTTCTTAGTGGCCAACCTGTACCATCAGAGCAAAAACCTAGTGTTGGATGCAGCATAAAGTGGCACCCAGGGAAGAAGTTTTGATTGATAAACTGTAATTATTTTGTTCATTAAAAGTTTCTTTTTCAGGTTTGCTATGCTTTATGTAATGTCACTAACCATATTAGACTGTTACACCTTATTTTCTTTCCATTCAGTGTGACTTGTAAGGAAATGGTGTCATTTGTGGTTCTTATAGTTACTGTGTATTTCACATAAGTAATAAGTTGCATACTATAGTGCGCGCTAATGAATACATTTTAATTGTAATAACAAGGGAATTTGTTTTGCAATCCTCCTAGAAATACAACCATATTTATTATA

>Glyma06g12930.1   sequence type=CDS   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGAGACTGAGACTCAAAGTGTCTTCAATTGGGTCACCTTTTCTGCAGTTAGGTTCTTCTGCAAGTGCAGCATGCTCTGTTTCCAAACTTGGTTTTCATCCACCACGCTTGCAACTCAACAAAAATTCACACCCAATAAGGCTTTTTGTTCGGGCTGCTAGAATTGAGTCCAAAGGTGTTACCTTGGGTTTCAGGACCCCACAATTTCAGCTTCCGGAGCCCCTTACCGGGACGACCTGGACATTGGATGATTTTGAAGCTTATCCAGCTCTACTGGTTATGTTTATATGCAATCACTGTCCATTTGTTAAGCACCTGAAAAAAGACATTGTAAAGCTTACAAAGTTCTATATGGAGAAAGGACTTGCCGTCATTGCCATATCTTCAAATTCCGTAGCCACACACCCCCAGGATGGTCCAGAATTCATGGCAGAAGATGCTAAACTGTTTGGTTATCCTTTCCCATACCTATATGATGAGTCACAGGATGTTGCACAACATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTCAAAAAGGATGGTCGAAGGCCGTTTGAGCTGGTTTATCATGGTCAATTTGATGATTCACGCCCAAGTAATAATGTACCGGTCACTGGAAGAGACTTGAGCTTGGCAATAGATCGTGTTCTTAGTGGCCAACCTGTACCATCAGAGCAAAAACCTAGTGTTGGATGCAGCATAAAGTGGCACCCAGGGAAGAAGTTTTGA

>Glyma06g12930.2   sequence type=CDS   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATTGAGACTGAGACTCAAAGTGTCTTCAATTGGGTCACCTTTTCTGCAGTTAGGTTCTTCTGCAAGTGCAGCATGCTCTGTTTCCAAACTTGGTTTTCATCCACCACGCTTGCAACTCAACAAAAATTCACACCCAATAAGGCTTTTTGTTCGGGCTGCTAGAATTGAGTCCAAAGGTGTTACCTTGGGTTTCAGGACCCCACAATTTCAGCTTCCGGAGCCCCTTACCGGGACGACCTGGACATTGGATGATTTTGAAGCTTATCCAGCTCTACTGGTTATGTTTATATGCAATCACTGTCCATTTGTTAAGCACCTGAAAAAAGACATTGTAAAGCTTACAAAGTTCTATATGGAGAAAGGACTTGCCGTCATTGCCATATCTTCAAATTCCGTAGCCACACACCCCCAGGATGGTCCAGAATTCATGGCAGAAGATGCTAAACTGTTTGGTTATCCTTTCCCATACCTATATGATGAGTCACAGGATGTTGCACAACATTTTGGAGCAGTTTGTACACCAGAATTTTACCTTTTCAAAAAGGATGGTCGAAGGCCGTTTGAGCTGGTTTATCATGGTCAATTTGATGATTCACGCCCAAGTAATAATGTACCGGTCACTGGAAGACTTGAGCTTGGCAATAGATCGTGTTCTTAG

>Glyma06g12930.1   sequence type=predicted peptide   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRLRLKVSSIGSPFLQLGSSASAACSVSKLGFHPPRLQLNKNSHPIRLFVRAARIESKGVTLGFRTPQFQLPEPLTGTTWTLDDFEAYPALLVMFICNHCPFVKHLKKDIVKLTKFYMEKGLAVIAISSNSVATHPQDGPEFMAEDAKLFGYPFPYLYDESQDVAQHFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNVPVTGRDLSLAIDRVLSGQPVPSEQKPSVGCSIKWHPGKKF*

>Glyma06g12930.2   sequence type=predicted peptide   gene model=Glyma06g12930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALRLRLKVSSIGSPFLQLGSSASAACSVSKLGFHPPRLQLNKNSHPIRLFVRAARIESKGVTLGFRTPQFQLPEPLTGTTWTLDDFEAYPALLVMFICNHCPFVKHLKKDIVKLTKFYMEKGLAVIAISSNSVATHPQDGPEFMAEDAKLFGYPFPYLYDESQDVAQHFGAVCTPEFYLFKKDGRRPFELVYHGQFDDSRPSNNVPVTGRLELGNRSCS*







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